Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq332 152 7e-32 >seq332 Length=679357 Score = 152 bits (168), Expect = 7e-32 Identities = 392/582 (67%), Gaps = 14/582 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || |||||||| | | |||||| || | || | || || | ||| Sbjct 209653 CCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTGCATG 209712 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 |||||||| |||||||| | ||| ||| || ||||| | | | | |||||| || || Sbjct 209713 AAGAGATCGGGAATCCACAAAGC-ATAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCC 209771 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATA 72151 ||||| | || |||||||| |||| | | |||| |||||||| || | ||| | Sbjct 209772 GTGGTTCTTCCTCAGGTCGAGGAA-GCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGA 209830 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | | || || || ||||| || ||||| || | || | |||||||| || | Sbjct 209831 TGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCGGTGTTGTTGT 209890 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | | ||| ||||| | ||| || |||| || ||||| || || || | Sbjct 209891 AGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCAATGTACGAGC 209950 Query 72272 CACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | |||||||||| | | |||| | || || || || || | || ||||| || Sbjct 209951 CGGTGGCACGAATGCGGTGGACGTTGA--GGCCAATACCGCCAGCAGTCTTGGAGATCAA 210008 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 ||||| || | ||| || ||||| ||||| || || || ||| |||||| | || Sbjct 210009 CGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAG 210068 Query 72390 AAAACAGCTAGACATTTGGTGACGACTA-GTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 || ||| ||||| || || || || || ||||| || | || || || |||| Sbjct 210069 GAAGCAGGATGACATCTG-TGGGGATGGTGTGCCGGCATTGAAGAGTGTCGGCGACGCGT 210127 Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CA 72506 | || || | || | |||| |||| | ||| ||||| || || || || ||| | Sbjct 210128 GTGTGAAGTACTTCTGCGACATGTAG-TCGTATGTCTCGATGGCCTTCTCAATGTCCTCC 210186 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 || || || || || ||||||||||| | ||| ||||| || Sbjct 210187 ATG-TGGATGCCAACAGCGACACGCATGAGCATGTGCTGCGG 210227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135919807160