Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq289 159 5e-34 seq332 129 9e-25 seq311 98.7 1e-15 >seq289 Length=227737 Score = 159 bits (176), Expect = 5e-34 Identities = 568/889 (64%), Gaps = 69/889 (8%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| |||| || || ||||| | || ||| ||||||| ||| Sbjct 106049 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGATCTCTCC 105990 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----ATATC 125137 |||||||| |||| ||| | | ||| | | || ||| |||| |||| || || Sbjct 105989 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGA---TGA-CGAGCGTTTCTTCATCTC 105934 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACAC 125196 ||| | | || ||||| || | |||||| || || |||||||| || | ||| || | Sbjct 105933 CCACGTCCTCGCTTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTTGTCGA-GC 105875 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 | |||||| ||| | || || |||| ||||| ||||| ||||| || |||| Sbjct 105874 GCTTCTCTGGCGAGGTACAGATCCCCGAGGCACGATGCTTCTACGGCTTCCAGATTATGA 105815 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314 | |||||||| ||| | || | |||||| || || |||| ||||| |||| || Sbjct 105814 TGGAGAACGTCCACGCCGAGACATACTCTCTCCTCATCGACACCTACATCAGCGAGCCCA 105755 Query 125315 -GCAACGTAAACACATGCTC-------TTTA---------------ACGCA--------- 125342 ||| || | | || || || || | ||||| Sbjct 105754 AGCAGCGCACATACCTGTTCAACGCCATTGACAACAGTAAGTTGCTACGCATCACGTACT 105695 Query 125343 -ATCGAC--------AC-------GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGAT 125386 ||||| || || || | || || || |||||| | |||| | Sbjct 105694 CCTCGACCTATGCTAACTCACCCTAGTTCCCTGCATCCGCAAGAAGGCTGATTGGGCCCT 105635 Query 125387 TCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 || |||||| ||| | || ||| | | |||| || | || || || ||||| || || Sbjct 105634 GCGATGGATCTCGGACAAGAACTCTACCTTCGCCAACCGCCTTGTCGCTTTCGCTGCTGT 105575 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 || ||||||||||| ||| || ||| ||||||| ||||| |||||||| || || Sbjct 105574 TGAAGGCATCTTCTTCAGCGGTTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCT 105515 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 |||||||| || || | |||||| | || ||||| ||||||||| | ||| || Sbjct 105514 TATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACCGA 105455 Query 125567 CTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAA 125626 |||||| || || || || | ||| | | | | | ||| | || Sbjct 105454 CTTTGCTTGCCTTCTCTT------CTCTTTGCTGAACAA---CCGCCCAAGCAAGGAGGC 105404 Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 ||| ||| | ||||| ||||| | || || || ||||| | |||| |||| Sbjct 105403 CGTCGCAGCCATCATCACCGAGGCCGTTACAATCGAGCAGGAGTTCTTGTCCGATGCCCT 105344 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || | || | ||||||||| | || |||||| ||||||| ||||| || || Sbjct 105343 GCCTTGTGCCCTGCTCGGCATGAACGCCGGTCTCATGTGCCAGTACATTGAGTTCGTCGC 105284 Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 || || || ||| | | || |||| |||||||||| || ||||| || Sbjct 105283 CGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCACTACAACGCCACCAACCCCTTCGA 105224 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 |||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 105223 CTTCATGGAGAACATCTCTCTTGCTGGCAAGACCAACTTCTTCGAGAAG 105175 >seq332 Length=679357 Score = 129 bits (142), Expect = 9e-25 Identities = 332/498 (67%), Gaps = 6/498 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || || |||||||| ||| Sbjct 209864 CAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTCGAGCCGTGGCACGCTGAC 209805 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||| ||| |||| || | || ||| ||| || |||| || || | || Sbjct 209804 GTCTTTGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCGTGCTCGCGAT 209745 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||||| | ||| | || ||| | |||||| |||| || | || ||| | Sbjct 209744 CTCTTCTATGCTTTGTGGATTCCCGATCTCTTCATGCAGCGTGTGCAAGAGAACGGCGAG 209685 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||| ||| || || || || || | || || ||||| ||||| Sbjct 209684 TGGACCCTTATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGCGACGAGTTC 209625 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGATGCACG 97174 | ||| ||| | |||||| | ||||| || || ||||| ||| ||| | Sbjct 209624 GTTGCCCTTTACGAGAAGTACGAGAAGGAGGGTCGTGGTCGCGAGACT-GTCCGTGCTC- 209567 Query 97175 AGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| || ||| | ||||| | ||| ||||||| |||||||| | || | ||| ||| Sbjct 209566 AGAAGCTCTGGTACGCCATTCTTGA-GGCTCAGACTGAGACTGGTAACCCCTTCATGCTC 209508 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 ||||||||| | | || | || |||||||| || | || ||||| |||| Sbjct 209507 TACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATTCGCAGCTCG 209448 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 ||| ||||||| || || | |||||| || | || || ||| || || ||| || Sbjct 209447 AATTTGTGCACTGAGATCATCGAGTACACCGCGCCTGATGAGGTTGCTGTCTGCAACCTT 209388 Query 97353 GCATCGGTCAATCTGCCC 97370 || || || ||||||| Sbjct 209387 GCCTCCGTTGCTCTGCCC 209370 >seq311 Length=328692 Score = 98.7 bits (108), Expect = 1e-15 Identities = 323/496 (65%), Gaps = 47/496 (9%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||| ||||||||||| || ||||| || || ||| |||||| || | |||| Sbjct 189680 GAGGGAGATCTGGGGCCTGTCTACGGGTTTCAATGGCGGCACTTTGGTGCGGAGTACAAG 189739 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACAC 70182 | ||| ||||||| | || || ||||| || || | || || | ||||||| | Sbjct 189740 GGTCACGATGCAGACTACACAGGGCAAGGTGTGGACCAGCTCGCTGA-AGTCATTGATAA 189798 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 || |||| | ||| || |||| || || || || ||||||||||||||||| | Sbjct 189799 GCTGAAGAACCGCCCATACGACCGGAGAATTATATTGAGCGCATGGAATCCTGCAGATCT 189858 Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC--------TC--- 70290 | | |||||||| || || || ||| |||||| | ||||| ||| || Sbjct 189859 CAAAAAGATGGCACTGCCGCCTTGCCACATGTTTG-CGCAGTTCTACGTCTCATTTCCAC 189917 Query 70291 ----GTACGATGGCAAAT----------------TGTCATGCTTAA-----TGTATCAGA 70325 | | || ||| | ||| ||| | |||||||| Sbjct 189918 GACAGAAGGAAGGCGAGACTCAGAAGCCGCGAGGTGTGCTGCATTCGCTGTTGTATCAGC 189977 Query 70326 GGA-GTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACG 70384 | |||| |||||||| || ||||| || || ||||| ||| ||| | | ||||| Sbjct 189978 GTTCGTGC-GACATGGGTCTTGGTGTGCCGTTCAACATCGCATCATATGCGCTTCTGACG 190036 Query 70385 CACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG--TTCGTACACACCATTGGCG 70442 |||||| ||||||| || || |||| | | | || ||| ||| ||||| |||| Sbjct 190037 CACATGCTTGCTCATGTTTGCGATCTGACACC--AGGAACCTTCACACATACCATGGGCG 190094 Query 70443 ACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGA 70502 | || ||||| || | ||||| |||| | | ||||||||||| |||||||||||| Sbjct 190095 ATGCACACGTATACTGCGATCACGTCGATGCGCTCAAGGTGCAACTAGAACGGGAGCCGC 190154 Query 70503 GACCTTTTCCCAAGCT 70518 || |||||||| || Sbjct 190155 GA-GATTTCCCAACCT 190169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055578073160