Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17]
391 sequences; 33,420,179 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq289 159 5e-34
seq332 129 9e-25
seq311 98.7 1e-15
>seq289
Length=227737
Score = 159 bits (176), Expect = 5e-34
Identities = 568/889 (64%), Gaps = 69/889 (8%)
Strand=Plus/Minus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
||| |||||||||| ||||| |||| || || ||||| | || ||| ||||||| |||
Sbjct 106049 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGATCTCTCC 105990
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----ATATC 125137
|||||||| |||| ||| | | ||| | | || ||| |||| |||| || ||
Sbjct 105989 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGA---TGA-CGAGCGTTTCTTCATCTC 105934
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACAC 125196
||| | | || ||||| || | |||||| || || |||||||| || | ||| || |
Sbjct 105933 CCACGTCCTCGCTTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTTGTCGA-GC 105875
Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256
| |||||| ||| | || || |||| ||||| ||||| ||||| || ||||
Sbjct 105874 GCTTCTCTGGCGAGGTACAGATCCCCGAGGCACGATGCTTCTACGGCTTCCAGATTATGA 105815
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314
| |||||||| ||| | || | |||||| || || |||| ||||| |||| ||
Sbjct 105814 TGGAGAACGTCCACGCCGAGACATACTCTCTCCTCATCGACACCTACATCAGCGAGCCCA 105755
Query 125315 -GCAACGTAAACACATGCTC-------TTTA---------------ACGCA--------- 125342
||| || | | || || || || | |||||
Sbjct 105754 AGCAGCGCACATACCTGTTCAACGCCATTGACAACAGTAAGTTGCTACGCATCACGTACT 105695
Query 125343 -ATCGAC--------AC-------GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGAT 125386
||||| || || || | || || || |||||| | |||| |
Sbjct 105694 CCTCGACCTATGCTAACTCACCCTAGTTCCCTGCATCCGCAAGAAGGCTGATTGGGCCCT 105635
Query 125387 TCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446
|| |||||| ||| | || ||| | | |||| || | || || || ||||| || ||
Sbjct 105634 GCGATGGATCTCGGACAAGAACTCTACCTTCGCCAACCGCCTTGTCGCTTTCGCTGCTGT 105575
Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506
|| ||||||||||| ||| || ||| ||||||| ||||| |||||||| || ||
Sbjct 105574 TGAAGGCATCTTCTTCAGCGGTTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCT 105515
Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566
|||||||| || || | |||||| | || ||||| ||||||||| | ||| ||
Sbjct 105514 TATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACCGA 105455
Query 125567 CTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAA 125626
|||||| || || || || | ||| | | | | | ||| | ||
Sbjct 105454 CTTTGCTTGCCTTCTCTT------CTCTTTGCTGAACAA---CCGCCCAAGCAAGGAGGC 105404
Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686
||| ||| | ||||| ||||| | || || || ||||| | |||| ||||
Sbjct 105403 CGTCGCAGCCATCATCACCGAGGCCGTTACAATCGAGCAGGAGTTCTTGTCCGATGCCCT 105344
Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746
|| | || | ||||||||| | || |||||| ||||||| ||||| || ||
Sbjct 105343 GCCTTGTGCCCTGCTCGGCATGAACGCCGGTCTCATGTGCCAGTACATTGAGTTCGTCGC 105284
Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806
|| || || ||| | | || |||| |||||||||| || ||||| ||
Sbjct 105283 CGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCACTACAACGCCACCAACCCCTTCGA 105224
Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|||||| | ||| || || | || ||||||||||| |||||||||
Sbjct 105223 CTTCATGGAGAACATCTCTCTTGCTGGCAAGACCAACTTCTTCGAGAAG 105175
>seq332
Length=679357
Score = 129 bits (142), Expect = 9e-25
Identities = 332/498 (67%), Gaps = 6/498 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| ||||| | || || |||||||| |||
Sbjct 209864 CAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTCGAGCCGTGGCACGCTGAC 209805
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| |||| ||| |||| || | || ||| ||| || |||| || || | ||
Sbjct 209804 GTCTTTGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCGTGCTCGCGAT 209745
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || ||||| | ||| | || ||| | |||||| |||| || | || ||| |
Sbjct 209744 CTCTTCTATGCTTTGTGGATTCCCGATCTCTTCATGCAGCGTGTGCAAGAGAACGGCGAG 209685
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| ||| ||||| ||| || || || || || | || || ||||| |||||
Sbjct 209684 TGGACCCTTATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGCGACGAGTTC 209625
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGATGCACG 97174
| ||| ||| | |||||| | ||||| || || ||||| ||| ||| |
Sbjct 209624 GTTGCCCTTTACGAGAAGTACGAGAAGGAGGGTCGTGGTCGCGAGACT-GTCCGTGCTC- 209567
Query 97175 AGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232
|||| || ||| | ||||| | ||| ||||||| |||||||| | || | ||| |||
Sbjct 209566 AGAAGCTCTGGTACGCCATTCTTGA-GGCTCAGACTGAGACTGGTAACCCCTTCATGCTC 209508
Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292
||||||||| | | || | || |||||||| || | || ||||| ||||
Sbjct 209507 TACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATTCGCAGCTCG 209448
Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352
||| ||||||| || || | |||||| || | || || ||| || || ||| ||
Sbjct 209447 AATTTGTGCACTGAGATCATCGAGTACACCGCGCCTGATGAGGTTGCTGTCTGCAACCTT 209388
Query 97353 GCATCGGTCAATCTGCCC 97370
|| || || |||||||
Sbjct 209387 GCCTCCGTTGCTCTGCCC 209370
>seq311
Length=328692
Score = 98.7 bits (108), Expect = 1e-15
Identities = 323/496 (65%), Gaps = 47/496 (9%)
Strand=Plus/Plus
Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123
||||| ||||||||||| || ||||| || || ||| |||||| || | ||||
Sbjct 189680 GAGGGAGATCTGGGGCCTGTCTACGGGTTTCAATGGCGGCACTTTGGTGCGGAGTACAAG 189739
Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACAC 70182
| ||| ||||||| | || || ||||| || || | || || | ||||||| |
Sbjct 189740 GGTCACGATGCAGACTACACAGGGCAAGGTGTGGACCAGCTCGCTGA-AGTCATTGATAA 189798
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242
|| |||| | ||| || |||| || || || || ||||||||||||||||| |
Sbjct 189799 GCTGAAGAACCGCCCATACGACCGGAGAATTATATTGAGCGCATGGAATCCTGCAGATCT 189858
Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC--------TC--- 70290
| | |||||||| || || || ||| |||||| | ||||| ||| ||
Sbjct 189859 CAAAAAGATGGCACTGCCGCCTTGCCACATGTTTG-CGCAGTTCTACGTCTCATTTCCAC 189917
Query 70291 ----GTACGATGGCAAAT----------------TGTCATGCTTAA-----TGTATCAGA 70325
| | || ||| | ||| ||| | ||||||||
Sbjct 189918 GACAGAAGGAAGGCGAGACTCAGAAGCCGCGAGGTGTGCTGCATTCGCTGTTGTATCAGC 189977
Query 70326 GGA-GTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACG 70384
| |||| |||||||| || ||||| || || ||||| ||| ||| | | |||||
Sbjct 189978 GTTCGTGC-GACATGGGTCTTGGTGTGCCGTTCAACATCGCATCATATGCGCTTCTGACG 190036
Query 70385 CACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG--TTCGTACACACCATTGGCG 70442
|||||| ||||||| || || |||| | | | || ||| ||| ||||| ||||
Sbjct 190037 CACATGCTTGCTCATGTTTGCGATCTGACACC--AGGAACCTTCACACATACCATGGGCG 190094
Query 70443 ACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGA 70502
| || ||||| || | ||||| |||| | | ||||||||||| ||||||||||||
Sbjct 190095 ATGCACACGTATACTGCGATCACGTCGATGCGCTCAAGGTGCAACTAGAACGGGAGCCGC 190154
Query 70503 GACCTTTTCCCAAGCT 70518
|| |||||||| ||
Sbjct 190155 GA-GATTTCCCAACCT 190169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741055578073160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |