Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq332 172 7e-38 >seq332 Length=679357 Score = 172 bits (190), Expect = 7e-38 Identities = 414/611 (68%), Gaps = 14/611 (2%) Strand=Plus/Plus Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 63198 |||||||||| || | || | | | ||||| || || | |||||||| | | || Sbjct 209624 CGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCC 209683 Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AAT 63257 |||| |||| || | ||| || | ||| |||||||| |||||||| | ||| ||| || Sbjct 209684 ACTCGCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGC-ATAGAAG 209742 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | | ||||| || || ||||| | || |||||||| |||| | Sbjct 209743 AGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAA-GCCAAA 209801 Query 63318 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | |||| |||||||| || | ||| ||||| | | | ||||| || ||||| || || Sbjct 209802 GACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 209861 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | || | |||||||| || || || | | ||| ||||| | ||||||||| Sbjct 209862 CTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGA 209921 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 63494 | | || ||||| || || || || |||||||||| | |||| | Sbjct 209922 TGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGA--GG 209979 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || || | || ||||| || ||||| || | |||||| ||||||||| Sbjct 209980 CCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCC 210039 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGT 63613 || ||||| || || |||||| | || || ||| ||||| | ||| || || Sbjct 210040 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCT-GTGGGGATGGTGT 210098 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGT 63672 || ||||| || | || || || ||||| || || | || | || | |||| | || Sbjct 210099 GCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGT 210157 Query 63673 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63731 | ||||| || || || || ||| | || || || || || ||||||||||| | | Sbjct 210158 ATGTCTCGATGGCCTTCTCAATGTCCTCCATG-TGGATGCCAACAGCGACACGCATGAGC 210216 Query 63732 ATGTGCTGAGG 63742 |||||||| || Sbjct 210217 ATGTGCTGCGG 210227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944155345560