Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq332 354 2e-92 seq297 86.0 2e-11 >seq332 Length=679357 Score = 354 bits (392), Expect = 2e-92 Identities = 1147/1755 (65%), Gaps = 32/1755 (2%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| ||||| || || || || |||||||| | ||| || Sbjct 210290 TTCGGCTTCAAGACCCTGGAGCGCTCATATCTGCTCCGCATCAATGGCAAGGTTGCCGAG 210231 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 ||||||||||| ||| | |||||||| ||| |||| ||||| ||| |||| Sbjct 210230 CGCCCGCAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGAGGACATTGAGAAG 210171 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || || || ||||| | || | | || || ||| ||||| ||||| |||| ||| Sbjct 210170 GCCATCGAGACATACGA-CTAC-ATGTCGCAGAAGTACTTCACACACGCGTCGCCGACAC 210113 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | |||||| || || | ||||||||||| || ||||| || | | ||||||| Sbjct 210112 TCTTCAATGCCGGCACACCATCCCCACAGATGTCATCCTGCTTCCTCATCGACATGAAGG 210053 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||| |||||||||| ||||| || |||| || || | || ||||||| || Sbjct 210052 AGGACAGCATTGAGGGTATCTACGACACGCTGAAGACCTGCGCGTTGATCTCCAAGACTG 209993 Query 363689 CAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGG 363746 | ||||| ||||| | | || ||||| |||||| ||| | | |||||| | || Sbjct 209992 CTGGCGGTATTGGCCTCAACG-TCCACCGCATTCGTGCCACCG-GCTCGTACATTGGAGG 209935 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || ||| || || || || |||| ||||| ||||| | |||| || || | Sbjct 209934 AACCAACGGAACATCAAACGGTTTGATTCCTATGCTCCGTGTCTACAACAACACCGCCCG 209875 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || |||||||||||||| |||||| || || ||||| || || |||||||| Sbjct 209874 TTATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTCGAGCCGTG 209815 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || || | |||| || || || || |||| ||| || || ||||| | || Sbjct 209814 GCACGCTGACGTCTTTGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCG 209755 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG---GA 363983 ||| || ||||| |||||||| | ||| || | || | || ||| |||| ||| || Sbjct 209754 TGCTCGCGATCTCTTCTATGCTTTGTGGATTCCCGATCTCTTCATGCAGCGTGTGCAAGA 209695 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 | || || ||| | || | || || |||| || || || || | || || | Sbjct 209694 GAACGGCGAG---TGGACCCTTATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTA 209638 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 || ||||| | ||||| || ||||| ||||| || |||||| | ||| |||| Sbjct 209637 CGGCGACGAGTTCGTTGCCCTTTACGAGAAGTACGAGAAGGAGGGTCGTGGTCGCGAGAC 209578 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | | || |||||||| |||| ||||| | || | |||| |||||| || | || Sbjct 209577 TGTCCGTGCTCAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGACTGAGACTGGTAACCC 209518 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| | ||||| ||| | |||| | ||| ||||||| || |||| ||||| || Sbjct 209517 CTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCAT 209458 Query 364224 TCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || |||| | || | || || ||||| || || |||||||| || || ||| ||| | Sbjct 209457 TC-GCAGCTCGAATTTGTGCACTGAGATCATCGAGTACACCGCGCCTGATGAGGTTGCTG 209399 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG-----TAAAAG-ATGGTACTTTTG 364336 | || |||||||| || | || || || | || | || ||| ||| || | Sbjct 209398 TCTGCAACCTTGCCTCCGTTGCTCTGCCCTCCTTCGTCGACTACAAGCGTGGAGAGTTCG 209339 Query 364337 ACCACCAGCATCTTTATGACGT--AACCTATCATGCTACTTGCAATCTCGACAAGGTTAT 364394 | | || | ||| | || || | || ||| ||| ||||||| ||||| | || Sbjct 209338 ATTTCAAGAAGCTTCACGAGGTCGTGCAGGTC-TGC-ACTCGCAATCTTAACAAGATCAT 209281 Query 364395 CGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGAT 364454 ||| || | ||||| || || || || || | ||||| | || || Sbjct 209280 CGAGGTTAACCACTATCCCGTTGAGGAGGCACGCCGCAGCAACTTCCGTCACAGGCCTAT 209221 Query 364455 TGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGATGGCATTT-GAT 364512 |||||||||||| || || || ||||||| ||| | |||| | | || ||| || Sbjct 209220 TGGTCTTGGTGTCCAAGGTCTTGCTGACGCTTTCCT--CGCTCTTCGCTTGCCTTTCGAG 209163 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG 364572 || ||||| ||| || || | ||||||| || || || ||| || || || Sbjct 209162 TCACCTGAGGCTAAGAAGCTCAACATCCAGATCTTCGAGACCATTTATCACGCTGCTCTG 209103 Query 364573 ACTGCTTCGTGTGA-TTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCC 364631 || |||| || || || ||| | | || ||| |||| || || || || || Sbjct 209102 ACCTCTTCTTGCGAGACTGCCAAGGAGC-TTGGTCCTTACGCTACGTACGAAGGCTCGCC 209044 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAA 364691 | |||||||||| | | |||| || | ||| ||||| || ||| | ||| | Sbjct 209043 TGTTTCGCAGGGCCAGCTGCAGTACGACATGTGGGGCGTCACCCCCACTGATCTCTGGGA 208984 Query 364692 CTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGC 364751 ||||| |||| ||| | |||| ||| |||||||| || | | || Sbjct 208983 CTGGGCCTCGCTGAAGGACAAGATCGCCCAGCACGGTGTCCGCAACTCTCTGCTCATTGC 208924 Query 364752 GCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTT 364811 |||||||||||| || ||||| | ||||| || || ||||||||||||||||| || | Sbjct 208923 GCCCATGCCCACTGCCTCTACCTCCCAGATTCTTGGTAACAACGAGTGCTTCGAGCCTTA 208864 Query 364812 TACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTA 364871 || || | ||||| || || || ||| | ||||| || | ||| || || | Sbjct 208863 CACCTCGAACATCTATTCCCGTCGTGTGCTTGCTGGAGAGTTCCAGGTCGTCAACCCTTG 208804 Query 364872 CCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCAT 364931 | ||||||||||| |||| || || ||| || | |||||||||| ||||| Sbjct 208803 GTTGCTCAAGGATCTTGTCGACATGGGTCTCTGGACAGAGAACATGAAGAACCGCATCAT 208744 Query 364932 CGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTA 364991 |||| ||| || | ||| ||| || |||| || || | ||| | | || Sbjct 208743 TGCCGAGGGTGGATCCATCCAGCGCATCCCTAACATTCCTGATGAGATCAAGGTTCTCTA 208684 Query 364992 CAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGC 365051 ||| ||||| ||||| || || ||| || |||| | ||||| || || || ||||| Sbjct 208683 CAAGACCGTCTGGGAGATCTCGCAGCGTACCATCATCCAGATGGCCGCTGACCGTGGTGC 208624 Query 365052 TTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCT 365111 || || ||| ||||| | ||| | ||||| |||| ||| | |||| | Sbjct 208623 CTTCATTGACCAGTCTCAGTCTCTGAACATTCACATGAAGGAGCCTACCATGGGCAAGAT 208564 Query 365112 TACATCCATGCATTT 365126 ||||||||||| || Sbjct 208563 CACATCCATGCACTT 208549 >seq297 Length=250371 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 65872 TTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGC 65931 ||||| | || ||||| || ||| |||| ||||| ||||| || |||| |||| Sbjct 75287 TTACGGACAGTGCCGTCGTACTTGACCATAACGTCTTCGAGCGCCTTAACGAGACGACGC 75346 Query 65932 TGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGAC 65991 || ||||||||| | | ||||| || || || ||||||| ||||||||||| || | | Sbjct 75347 TGAATGTAACCAGTTTCGGCAGTCTTGACGGCAGTATCAATCAGACCTTCACGACCAGCC 75406 Query 65992 ATTGCAGAAAAGAAAAACTC 66011 || || ||||||||||| Sbjct 75407 ATGGCGTGGAAGAAAAACTC 75426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347070605762