Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq332 150 2e-31 seq308 131 2e-25 seq289 127 2e-24 seq334 102 8e-17 seq306 98.7 9e-16 >seq332 Length=679357 Score = 150 bits (166), Expect = 2e-31 Identities = 966/1516 (64%), Gaps = 55/1516 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||| || || | ||||||||| |||| | ||| || ||| | || Sbjct 208810 TTGACGACCTGGAACTCTCCAGCAAGCACACGACGGGAATAGATGTTCGAGGTGTAAGGC 208869 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || || || || || | ||| | || ||||||||| ||| | Sbjct 208870 TCGAAGCACTCGTTGTTACCAAGAATCTGGGAGGTAGAGGCAGTGGGCATGGGCGCAATG 208929 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| ||| | ||||| |||| |||| ||||| Sbjct 208930 AGCAGAGAGTTGCGGACACCGTGCTGGGCGATCTTGTCCTTCAGCGAGGCCCAGTCCCAG 208989 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT-CG---CTGGCGGG 145293 || ||| || | ||| |||||||||||||||||| ||||| || | |||| Sbjct 208990 AGATCAGTGGGGGTGACGCCCCACATGTCGTACTGCAGCTGGCCCTGCGAAACAGGCG-- 209047 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCC 145351 ||||| | | | |||| | ||||| | ||||| ||||||| | | Sbjct 209048 --AGCCTTCGTACGTAGCGTAA--GGACCAAGCTCCTTGGCAGTCTCGCAAGAAGAGGTC 209103 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411 ||||| || |||||| |||||| || || |||||||| | | || ||| | Sbjct 209104 AGAGCAGCGTGATAAATGGTCTCGAAGATCTGGATGTTGAGCTTCTTAGCCTCAGGTGAC 209163 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 ||| | |||| ||| || | ||||| || || || || || | || | || || Sbjct 209164 TCGAAAGGCAAGCGAAGAGCGAGGAAAGCGTCAGCAAGACCTTGGACACCAAGACCAATA 209223 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531 |||| || | |||||| | ||| ||| | ||||| | ||| ||||| Sbjct 209224 GGCCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGGATAGTGGTTAACCTCGATG 209283 Query 145532 ATTTTATTCAAGTTTCGCACTAC-TACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || || ||| || | | | |||| | | | | ||| | || || || Sbjct 209284 ATCTTGTT-AAGATTGCGAGTGCAGACCTGCACGACCTCGTGAAGCTTCTTGAAATCGAA 209342 Query 145591 C---CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | | | || || |||| | || | || | || || | || || || Sbjct 209343 CTCTCCACGCTTGTAGTCGACGA---AGGAGGGCAGAGCAACGGAGGCAAGGTTGCAGAC 209399 Query 145648 TGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG- 145705 || ||| || |||| || |||| | | |||||| | ||||||||| | | | | Sbjct 209400 AGCAACCTCATCAGGCG-CGGTGTACTCGATGATCTCAGTGCACAAATT-CGAGCTGCGA 209457 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| || || || | ||| || || ||||||||| || ||||||||||||||| | Sbjct 209458 ATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAG 209517 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCA 145823 || |||||||| ||| | || || || | || || || | ||| ||||| | Sbjct 209518 GGGTTACCAGTCTCAGTCTGAGCCT-CAAGA-ATGGCGTACCAGAGCTTCTGAGCACGGA 209575 Query 145824 CCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAAC 145883 | || | || ||||| | ||||| ||| ||| || | | ||| || | Sbjct 209576 CAGTCTCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGTCGC 209635 Query 145884 CGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGG 145943 ||||| || | ||||| || |||| |||||||||||| || | ||| ||||||| Sbjct 209636 CGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCT 209695 Query 145944 CGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTT 146003 | | || |||| ||| || | ||| || | ||||| || || | | ||||| || Sbjct 209696 CTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGCGAGC-- 209753 Query 146004 TGCAATCCTCAGC--ACCCATGTTTC-GCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 | | |||| | || || ||| | ||| | || | | | ||| ||| |||| Sbjct 209754 -ACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGCGT 209812 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGT 146117 ||||||| || | |||| ||| | || || || |||||||||||||| || | Sbjct 209813 GCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCGACAT 209872 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 ||| | ||||||| |||| || | ||| || | ||| | | | ||||| | Sbjct 209873 AACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGTTGG 209932 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-G 146236 | || | |||| || || | || || || || | ||| | |||||| | Sbjct 209933 TTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGAGGCCAATACCGCCAG 209992 Query 146237 CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC 146295 | || |||||| || ||||| ||| | ||||| |||||||| || |||||||| || Sbjct 209993 CAGT-CTTGGAGATCAACGCGCAGGTCTTC-AGCGTGTCGTAGATACCCTCAATGCTGTC 210050 Query 146296 --GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 |||| ||| ||| || ||||| || ||||||| | || || || || | Sbjct 210051 CTCCTTC--ATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCCGGCATTG 210108 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC-TCAT-CATCCGATACGTTTCGA 146411 || | ||||| |||||| || || | ||| || ||| | || || || |||| Sbjct 210109 AAGAGTGTCGGCGACGCGTGTGTGAA-GTACTTCTGCGACATGTAGTCG-TATGTCTCGA 210166 Query 146412 TAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGG 146471 | || | | |||||| || || ||||| | |||||| |||||||||||||| || | Sbjct 210167 TGGCCTTCTCAATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGCTGCG 210226 Query 146472 GCCGCTCCGCCA-CTTG--ATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGT 146528 | ||||| || | |||| |||| || | || ||| | ||||||||| ||| Sbjct 210227 GGCGCTCGGCAACCTTGCCATTG---ATGCGGAGCAGATATGAGCGCTCCAGGGTCTTGA 210283 Query 146529 ATCCGAAAAATTTGTA 146544 | ||||| || | ||| Sbjct 210284 AGCCGAAGAACTGGTA 210299 >seq308 Length=314950 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| || || | || |||||||| ||||||||||| || Sbjct 275385 CCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAG 275444 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| |||||| | || | ||||||||||| || ||| Sbjct 275445 AGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGG 275504 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| | ||||| | Sbjct 275505 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAACC 275564 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || |||||||||||||| Sbjct 275565 TCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || | ||| | || |||||||| ||||||||||| ||| Sbjct 275841 CCACCACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAG 275900 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| |||| | |||||||||||| || || Sbjct 275901 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 275960 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | || |||| ||||||| Sbjct 275961 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACC 276020 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 276021 TCGAGAGTGATGGTCTTTCCGGT 276043 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | ||| |||||||| || |||||||| ||| Sbjct 275613 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 275672 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | ||||||||||||||||||| Sbjct 275673 AGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275732 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||| | | || | || || | ||||| | Sbjct 275733 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACC 275792 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | || || ||||| |||||||| Sbjct 275793 TCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| ||| || ||||| ||||| ||||||||||| Sbjct 276153 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCGAGCTGCTTGCCG 276212 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || ||||||||||| ||||| || ||||| ||||| ||| || |||| Sbjct 276213 GCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTG 276272 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | | || | ||||| | ||||| | || | ||| | || |||||||| Sbjct 276273 ACGTTGTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 276325 >seq289 Length=227737 Score = 127 bits (140), Expect = 2e-24 Identities = 252/366 (69%), Gaps = 23/366 (6%) Strand=Plus/Minus Query 46240 ATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGAC 46299 |||||||| || || || ||||||||| || || |||||||||||| |||| || ||| Sbjct 105513 ATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACCGAC 105454 Query 46300 TTTGCGTG---TCTCTACTATAACACTCGCGTGCACGAC-----AAGCTTGCGCCCGACA 46351 ||||| || ||||| || | | || || || || |||| | || Sbjct 105453 TTTGCTTGCCTTCTCTTCTCT-----TTGC-TGAACAACCGCCCAAGCAAG-----GAGG 105405 Query 46352 CCGTGCTGAGC-ATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCA 46410 |||| | ||| || ||| ||||| || | || ||| ||||||| || | | || Sbjct 105404 CCGT-CGCAGCCATCATCACCGAGGCCGTTACAATCGAGCAGGAGTTCTTGTCCGATGCC 105346 Query 46411 CTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC-AATGTGCGACTACATCGAGTTTGT 46469 ||||| ||||||||| ||||||||||| | ||| |||||| | ||||| ||||| || Sbjct 105345 CTGCCTTGTGCCCTGCTCGGCATGAACGC-CGGTCTCATGTGCCAGTACATTGAGTTCGT 105287 Query 46470 AGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATT 46529 || ||||| ||||| || || | | || ||||| | |||| ||| || || Sbjct 105286 CGCCGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCACTACAACGCCACCAACCCCTT 105227 Query 46530 TGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGG 46589 || || ||| | |||||||| || | ||||| || || || ||||| |||||||| || Sbjct 105226 CGACTTCATGGAGAACATCTCTCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGG 105167 Query 46590 CGAGTA 46595 || || Sbjct 105166 TGACTA 105161 >seq334 Length=270071 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | |||||||||||| || |||||||| ||| Sbjct 22360 CCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 22301 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || |||||||||||||| || Sbjct 22300 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 22241 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 22240 ATGCCCTCCTTGTC 22227 >seq306 Length=305464 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| ||| Sbjct 48723 CCACCACGCAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 48664 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 48663 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 48604 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 48603 ATGCCCTCCTTGTC 48590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010493037440