Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq369 140 2e-28 seq248 93.3 3e-14 >seq369 Length=7588 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1512 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1571 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1572 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1606 >seq248 Length=151005 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/303 (67%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||||||||| ||| |||| || ||||| |||| || | Sbjct 23903 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGCCTCCAGTCCAAGATCGAAGGCA 23962 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| ||||| || || || ||||| |||||| || | ||||| || | | | | Sbjct 23963 AGGGTAACGGCATCAAGACTGTCATCGTCAACCTGACCAGTGTCGCCAACTCCTTGGCTC 24022 Query 6307 GCCCTGCCACCT-ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTT 6365 | ||| ||| || || | || || ||||| | ||| || || |||||||| | Sbjct 24023 GTCCT-CCAGCTCACGTCATCAAGTACTTCGGTTTCGAGCTCGGTGCTCAGACCAACACA 24081 Query 6366 GATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425 | ||| |||| |||| ||| | ||||| | || | | |||||| ||||| Sbjct 24082 AGCCCCAACGACGACCGCTGGATCATCAACGGTGCTCACGATGCCAACAAGCTCCAGGAT 24141 Query 6426 TTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 | ||||| ||||| || ||||||||| || || | | ||| | ||||| ||||| Sbjct 24142 TACCTTGATGGCTTCATCTCCAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCTGAGACT 24201 Query 6486 GAG 6488 ||| Sbjct 24202 GAG 24204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945603871921