Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq332 168 8e-37 >seq332 Length=679357 Score = 168 bits (186), Expect = 8e-37 Identities = 413/611 (68%), Gaps = 14/611 (2%) Strand=Plus/Plus Query 62994 CGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053 |||||||||| || | || | | || ||||| || || | |||||||| | | || Sbjct 209624 CGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCC 209683 Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AAT 63112 |||| |||| || | ||| || | ||| |||||||| |||||||| | ||| ||| || Sbjct 209684 ACTCGCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGC-ATAGAAG 209742 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | | ||||| || || ||||| | || |||||||| |||| | Sbjct 209743 AGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAA-GCCAAA 209801 Query 63173 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | |||| |||||||| || | ||| ||||| | | | ||||| || ||||| || || Sbjct 209802 GACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 209861 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | || | |||||||| || || || | | ||| ||||| | ||| || || Sbjct 209862 CTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGA 209921 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 63349 ||| || ||||| ||| || || || |||||||||| | |||| | Sbjct 209922 TGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGA--GG 209979 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || || | || ||||| || ||||| || | ||| || ||||| ||| Sbjct 209980 CCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCC 210039 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA-GT 63468 || || || || ||| |||||| | || || ||| ||||| || || || || Sbjct 210040 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTG-TGGGGATGGTGT 210098 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA-GTAGATTGT 63527 || ||||| || | || || || ||||| || || | || | || | |||| | || Sbjct 210099 GCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGT 210157 Query 63528 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63586 | ||||| || || || || ||| | || || || || || ||||||||||| | | Sbjct 210158 ATGTCTCGATGGCCTTCTCAATGTCCTCCATG-TGGATGCCAACAGCGACACGCATGAGC 210216 Query 63587 ATGTGCTGAGG 63597 |||||||| || Sbjct 210217 ATGTGCTGCGG 210227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628903123600