Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq308 116 3e-21 seq306 91.5 1e-13 >seq308 Length=314950 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| || || || | |||| ||| | ||| | | || Sbjct 276043 ACCGGAAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGTCG 275984 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || || || || |||||||| || || || || Sbjct 275983 AAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTCGCTGGTAAG 275924 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||||| ||||||| ||||||||||| || || ||||| | ||| Sbjct 275923 CAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACACTGCAT 275864 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| |||| || ||| Sbjct 275863 CTTGTCCTGCGTCTGCGTGGTGGT 275840 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| | || || || | | | Sbjct 275611 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 275552 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||||||||| ||||| || || Sbjct 275551 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 275492 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | ||||| |||||| |||| || |||||| Sbjct 275491 CAGCGCCTGATTTTCGCAGGAAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAAC 275432 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | || || || |||| |||||||||| Sbjct 275431 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTGCGCGGAGG 275385 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| ||| |||| ||||| ||||| | | |||||| | ||| | |||| Sbjct 276325 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCGGATACCATCGACAACGTCAAGAGC 276266 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || || || || || | || ||||||||||| Sbjct 276265 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAG 276206 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||| | ||||| |||||||| || || || || || Sbjct 276205 CAGCTCGAGGATGGTCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGAC 276153 >seq306 Length=305464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || || |||||||| ||| | || Sbjct 48589 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGA 48648 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 |||| |||||| ||||||| |||||||| || || || || || Sbjct 48649 GGATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGAC 48693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725999864915