Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq308 172 1e-37 seq289 149 1e-30 seq327 102 2e-16 >seq308 Length=314950 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||||||||| || |||| |||||||| || |||||||| || || ||||| || || || Sbjct 275384 TCCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGA 275443 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| || ||||| || || | || ||||| ||||| Sbjct 275444 GAGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGG 275503 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 || || |||||||| || ||||| | |||||| ||||| ||||| ||| || || | Sbjct 275504 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTC-GCTAGACTCAA 275562 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| |||||||| || || ||||| ||||||||||| |||||||| Sbjct 275563 CCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || |||||||| || |||||||| || ||||| Sbjct 275613 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 275672 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | |||||| || ||||| ||||| | || ||||| || || Sbjct 275673 AGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275732 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||| | ||| ||| ||||| ||||| | || || || Sbjct 275733 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACC 275792 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || | |||||||||||| |||||||| Sbjct 275793 TCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || |||||||| || || ||||| || |||||| Sbjct 275841 CCACCACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAG 275900 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || ||||| || ||| Sbjct 275901 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 275960 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| ||| ||||||||||| | || || || Sbjct 275961 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACC 276020 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| ||||| || Sbjct 276021 TCGAGAGTGATGGTCTTTCCGGT 276043 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || ||||| Sbjct 276123 CCACCACGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 276182 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || | | || ||||| || ||| Sbjct 276183 AGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGA 276242 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||| |||||||| || | || || || Sbjct 276243 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACC 276302 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 276303 TCAAGGGTGATCGTCTTACCGGTGA 276327 >seq289 Length=227737 Score = 149 bits (164), Expect = 1e-30 Identities = 325/477 (68%), Gaps = 20/477 (4%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 105142 CATGACACCAGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGC 105201 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| |||| | |||||||||| || Sbjct 105202 AAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTGGGGTTGCC 105261 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||| || |||||||| |||||||||| ||| || | | ||| Sbjct 105262 GAGGGCCAGCAGCAGGCGGTCGGCGACGAACTCAATGTACTGGCACATGAGACCGGCGTT 105321 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | || || | ||| ||| | | ||| |||| ||| | | || | Sbjct 105322 CATGCCGAGCAGGGCACAAGGCAGGGCATCGGACAAGAACTCCTGCTCGATTGTAACGG- 105380 Query 10175 TTCCTCGACGATGCTCTTTACCACG---TCAAGG---GACAGCTTGTTCTCGAGCTTCGA 10228 ||||| |||| | | | ||| || | | | |||||| ||| || Sbjct 105381 --CCTCGGTGATGATGGCTGCGACGGCCTCCTTGCTTGGGCGGTTGTTC---AGCAAAGA 105435 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | || || |||| | ||| | |||||||||||| ||||| ||||||||| Sbjct 105436 GAAGAGAAGGCAAGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGA 105495 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACC 10347 || ||||||||||| || || || || ||||||||| |||| ||| |||||| | Sbjct 105496 GAATGTGAGACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATGGACGC-GAACGAAC 105554 Query 10348 CGGAGAACAGAAGA--CCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 || || |||||| || || || ||| | | ||||| ||||| | ||||||| Sbjct 105555 CGCTGA--AGAAGATGCCTTCAACAGCA-GCGAAAGCGACAAGGCGGTTGGCGAAGG 105608 Score = 87.8 bits (96), Expect = 3e-12 Identities = 189/274 (69%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 10520 GAGCAGGGAGTATTGCTCGCTGTGGACGCTCTC-ATTGTACCCCTGGTAAGCGTAGAA-C 10577 ||| || |||||| |||| ||||||| |||| || || | ||| | ||||||| | Sbjct 105780 GAGGAGAGAGTATGTCTCGGCGTGGACGTTCTCCATCATAATC-TGGAAGCCGTAGAAGC 105838 Query 10578 ATACGTGCCGAGGGG-TCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCAC 10636 || |||||| |||| || || || || | | ||| | | |||||||| | || Sbjct 105839 AT-CGTGCCTCGGGGATCTGT-ACCTCGCCAGAGAAGCGCTCGACAAGGTTCTCGTTGAC 105896 Query 10637 CATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC 10696 ||||| ||| | | || ||||| |||||| ||| ||||||| ||||| ||||| Sbjct 105897 AATGCCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAACGCTCGTCATC 105956 Query 10697 GTTCAG----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGG 10752 ||| || || ||| ||||| | |||| | ||| | || |||||| ||| Sbjct 105957 GTTGAGACGCTTGTTC----CAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCTGCGG 106012 Query 10753 TCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||||||||| || |||||||||||||||| || Sbjct 106013 TCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTG 106046 >seq327 Length=659190 Score = 102 bits (112), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || || | | ||| || ||||||||||| || |||||||| || Sbjct 291878 TTCTGCTCGTAGTGGTAGATATCTGTGCAAACGGCGTCAAGGAATCCGGAGTCGTGAGAA 291819 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGA-GCCATGCCACGTT 225528 ||||| | | | | | || ||| |||||||| | | ||| |||| || ||||| Sbjct 291818 ACAATCAAGCTAGTGATCTCAGTATGGCTCTTGAGGTAC-TCCTGAAGCCAAGCGACGTT 291760 Query 225529 GCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGAT 225588 | ||||||| ||||| ||||||||||| || | ||| | ||| || || || || Sbjct 291759 GGCAACGTCCAAATGGTTAGTAGGTTCGTCGAGCAACAGAACGTCGGCGCGCATAAGCAT 291700 Query 225589 GGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 || || | | || ||||||||| ||||| || || |||| |||||| Sbjct 291699 AGCACGGGCCAAAGCCAGCTTCATCTTCCAACCTCCAGACAAGGAGCC 291652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617895570520