Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq289 107 4e-18 >seq289 Length=227737 Score = 107 bits (118), Expect = 4e-18 Identities = 267/404 (66%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 243353 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 243412 ||||||| |||||| ||| ||| | ||||| || ||| | || |||||| ||| Sbjct 105542 CCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTCACATTCTCCAACGAGCTCA 105483 Query 243413 TCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGA 243472 || ||||||||||||| | ||| | || | | ||| | | || ||| || Sbjct 105482 TCTCTCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTTCTCTTCTCTTTGCT---GA 105426 Query 243473 ACAAGCTACCATTC---GAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 |||| | ||| | || | ||| | |||||||| || || ||| || ||| Sbjct 105425 ACAACCGCCCAAGCAAGGAGGCCGTCGCAGCCATCATCACCGAGGCCGTTACAATCGAGC 105366 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||| | | ||| || | || || || | ||||||||| | | |||||| Sbjct 105365 AGGAGTTCTTGTCCGATGCCCTGCCTTGTGCCCTGCTCGGCATGAACGCCGGTCTCATGT 105306 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | |||||||| || ||||| ||||||||| | | | || || || | || | Sbjct 105305 GCCAGTACATTGAGTTCGTCGCCGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCACT 105246 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||| ||| |||||||| | ||| |||||| ||| || ||| || || || |||| Sbjct 105245 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGCTGGCAAGACCAACT 105186 Query 243710 TCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 ||||||| ||||| || |||| || || ||||||| ||| Sbjct 105185 TCTTCGAGAAGCGCGTTGGTGACTACCAGAAGGCTGGTGTCATG 105142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874474915850