Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq332 221 1e-52 >seq332 Length=679357 Score = 221 bits (244), Expect = 1e-52 Identities = 608/924 (66%), Gaps = 6/924 (1%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||| | |||||| || |||||| || || || ||| || ||||| Sbjct 210302 AACTACCAGTTCTTCGGCTTCAAGACCCTGGAGCGCTCATATCTGCTCCGCATCAATGGC 210243 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| ||||||| ||||| || |||| ||||| ||||| | || || ||| | Sbjct 210242 AAGGTTGCCGAGCGCCCGCAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGAG 210183 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | | ||| | || || Sbjct 210182 GACATTGAGAAGGCCATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCG 210123 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| || ||||| || || || || ||||||||||| || || ||||| || Sbjct 210122 TCGCCGACACTCTTCAATGCCGGCACACCATCCCCACAGATGTCATCCTGCTTCCTCATC 210063 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | ||||| || ||| ||| ||| || Sbjct 210062 GAC-ATGAAGGAGGACAGCATTGAGGGTATCTACGACACGCTGAAGACCTGCGCGTTGAT 210004 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| |||||| | | ||||||| || || || Sbjct 210003 CTCCAAGACTGCTGGCGGTATTGGCCTCAACGTCCACCGCATTCGTGCCACCGGCTCGTA 209944 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| | || ||||| || || || ||||| | | ||||||||||| |||| |||||| Sbjct 209943 CATTGGAGGAACCAACGGAACATCAAACGGTTTGATTCCTATGCTCCGTGTCTACAACAA 209884 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || || || || ||||||||||| | | | ||| |||| || |||| || Sbjct 209883 CACCGCCCGTTATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCT 209824 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| |||||||| | |||||||||||||| || Sbjct 209823 CGAGCCGTGGCACGCTGACGTCTTTGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGA 209764 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||||| ||| | ||| | || || || || ||| | || Sbjct 209763 GGAGGTTCGTGCTCGCGATCTCTTCTATGCTTTGTGGATTCCCGATCTCTTCATGCAGCG 209704 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || | | ||| || |||| ||| | |||||||| || || || || || | || Sbjct 209703 TGTGCAAGAGAACGGCGAGTGGACCCTTATGTGTCCCAACGAGTGCCCTGGCCTCGCTGA 209644 Query 94374 CGTTTGTGG-ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 ||| | || || | || | | | | || | ||||| | |||| | || | Sbjct 209643 CGTCTACGGCGACGAG-TTCGTTGCCCTTTACGAGAAGTACGAGAAGGAGGGTCGTGGTC 209585 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || | | |||| |||||| ||| | || | || | ||| ||||| Sbjct 209584 -GCGAGACTGTCCGTGCTCAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGACTGAGACT 209526 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| ||| | | |||||| ||| |||| ||| ||||||| || ||||| Sbjct 209525 GGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTC 209466 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || || ||||||||| ||||||| ||||| ||||||| || | || || ||| Sbjct 209465 GGTACCATTCGCAGCTCGAATTTGTGCACTGAGATCATCGAGTACACCGCGCCTGATGAG 209406 Query 94612 ATTGCTGTGTGTAACCTGGGCTCC 94635 ||||||| || ||||| | |||| Sbjct 209405 GTTGCTGTCTGCAACCTTGCCTCC 209382 Score = 114 bits (126), Expect = 1e-20 Identities = 205/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| | ||||| | || ||||||||||| ||||| || | ||||| Sbjct 208952 CACGGTGTCCGCAACTCTCTGCTCATTGCGCCCATGCCCACTGCCTCTACCTCCCAGATT 208893 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 ||||| |||||||||| ||||| || | |||||| ||| | || | | || ||||| Sbjct 208892 CTTGGTAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTATTCCCGTCGTGTGCTT 208833 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGT 95255 || || || |||| ||| ||||| | || | || | || || | ||||| | Sbjct 208832 GCTGGAGAGTTCCAGGTCGTCAACCCTTGGTTGCTCAAGGATCTTGTCGAC-ATGGGTCT 208774 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 ||| || || | ||||||| | | || || ||| ||||| |||||| Sbjct 208773 CTGGACAGAGAACATGAAGAACCGCATCATTGCCGAGGGTGGATCCATCCAGCGCATCCC 208714 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || || || ||||||| |||||||||||||| ||||||||| ||||||| Sbjct 208713 TAACATTCCTGATGAGATCAAGGTTCTCTACAAGACCGTCTGGGAGATCTCGCAGCG 208657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720782040360