Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq332 145 8e-30 seq289 136 4e-27 seq308 102 8e-17 >seq332 Length=679357 Score = 145 bits (160), Expect = 8e-30 Identities = 427/652 (65%), Gaps = 7/652 (1%) Strand=Plus/Plus Query 153810 CGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCG 153869 || ||||| ||||||| |||||| || | ||||||||||||||| ||| ||| Sbjct 209590 CGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGTCGCCGTAGACGTCAGCG 209649 Query 153870 AGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGC 153929 ||||| || |||| | |||||||| || | |||| ||| | | || || || Sbjct 209650 AGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTGC 209709 Query 153930 ATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCG 153989 ||||| ||||| || | ||| | || || | ||| ||||| || |||||| | Sbjct 209710 ATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGCGAGCACGAACCTCCTCCTTG 209769 Query 153990 CCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 154049 || ||| |||| | ||| | || | ||| ||| |||||||| || || | |||| Sbjct 209770 CCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAG 209829 Query 154050 ACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTG 154106 | ||| | ||||| ||| || || ||||| ||||| | || | | |||||| Sbjct 209830 ATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCGGTGTTGTTG 209889 Query 154107 AAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTG 154166 |||| || | ||| || || ||| ||| || |||||||| || | | Sbjct 209890 TAGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCAATGTACGAG 209949 Query 154167 CCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGC 154225 ||| ||| || | | || ||||| | |||||| ||||| || || ||| || || Sbjct 209950 CCGGTGGCACGAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGATCAA 210008 Query 154226 AGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAA 154285 |||||| |||||| |||||| || || ||||| || || | | ||| | Sbjct 210009 CGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAG 210068 Query 154286 GAAACACGAACACATTTG-CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGT 154344 ||| || || |||| || || ||| | || || || ||||| || || ||||| Sbjct 210069 GAAGCAGGATGACATCTGTGGGGATG-GTGTGCCGGCATTGAAGAGTGTCGGCGACGCGT 210127 Query 154345 GCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGC 154404 | || || || || ||| | ||| || |||||||| | || || || || Sbjct 210128 GTGTGAAGTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCAATGTCCTCCA 210187 Query 154405 CGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||| ||||| | ||||| |||||||||||||||||||| || ||||| || Sbjct 210188 TGTGGATGCCAACAGCGACACGCATGAGCATGTGCTGCGGGCGCTCGGCAAC 210239 >seq289 Length=227737 Score = 136 bits (150), Expect = 4e-27 Identities = 342/514 (67%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | ||||| |||||| | ||||| || |||||| | | | | | | Sbjct 105669 GTTCCCTGCATCCGCAAGAAGGCTGATTGGGCCCTGCGATGGATCTCGGACAAGAACTCT 105610 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| | ||| | || || ||||| || || ||| | || || ||| Sbjct 105609 ACCTTCGCCAACCGCCTTGTCGCTTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGTTCG 105550 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || ||||||| | | || | | || | |||||||| || || ||| |||| Sbjct 105549 TTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTCACATTCTCCAAC 105490 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 ||| | || || |||||||| || ||||||| |||||||| ||||| || | | Sbjct 105489 GAGCTCATCTCTCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTTCTCTTCTCTTTG 105430 Query 52566 C-GCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 | | |||| || | | ||| | || ||| ||| ||||| || | Sbjct 105429 CTGAACAACCGCCCAA--GCAA--GGAGGCCGTCGCAGCCATCATCACCGAGGCCGTTAC 105374 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 ||||| ||||||| || | | || ||||| | ||||| ||||||||||| | Sbjct 105373 AATCGAGCAGGAGTTCTTGTCCGATGCCCTGCCTTGTGCCCTGCTCGGCATGAACGC-CG 105315 Query 52685 GTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC 52743 ||| ||||||| ||||||| ||||| || || || || ||| || || ||||| | | Sbjct 105314 GTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGCCTGCTGCTGGCCCTCGGCAACC 105255 Query 52744 CAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 | ||| ||| |||||| ||| || || || || ||| | ||||| || |||| |||| Sbjct 105254 CCAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGCTGGCA 105195 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||||||||| || || || || Sbjct 105194 AGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 105161 >seq308 Length=314950 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | |||||||| || |||||||||||| Sbjct 275613 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 275672 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || ||||| | |||| |||||||| ||||||||||| Sbjct 275673 AGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275732 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| | || | || | | || | ||||| | |||||| || Sbjct 275733 ATGCCCTCCTTATC-CTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAAC 275791 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || || || || |||||||| Sbjct 275792 CTCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | ||| | | |||||||| ||||||||||||||| Sbjct 275841 CCACCACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAG 275900 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || ||||| | |||| |||||||| ||||| || || Sbjct 275901 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 275960 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| |||||| ||| Sbjct 275961 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACC 276020 Query 138568 TCGACCGTCAGCGTTTTACCAGTCA 138592 |||| || | || || || |||| Sbjct 276021 TCGAGAGTGATGGTCTTTCCGGTCA 276045 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || |||||||| || || |||| | Sbjct 276156 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCGAGCTGCTTGCCGGCA 276215 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 276216 AAGATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACG 276275 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | ||| || | ||||||||||| | || | ||| ||||| || Sbjct 276276 TTGTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 276325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | |||||||| |||||||||||||| Sbjct 275385 CCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAG 275444 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | | || || ||||| ||||| || || Sbjct 275445 AGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGG 275504 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||| | ||||| || Sbjct 275505 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATTGTGTCGCTAGACTCAAC 275563 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || || ||||||||||| Sbjct 275564 CTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259974517520