Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq289 120 3e-22 seq308 116 4e-21 seq334 84.2 2e-11 >seq289 Length=227737 Score = 120 bits (132), Expect = 3e-22 Identities = 249/365 (68%), Gaps = 17/365 (5%) Strand=Plus/Minus Query 47221 TTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCA 47280 |||||||||| ||||| || ||||||||| ||||| | ||||| ||| |||||||| Sbjct 105515 TTATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACCG 105456 Query 47281 ACTTTGCCTG---TCTCTACTACAACACT--AGAGTCGATCAA--AAGTTGGACGTGCCC 47333 ||||||| || ||||| || | || | | || ||| ||| || ||| Sbjct 105455 ACTTTGCTTGCCTTCTCTTCT-CTTTGCTGAACAACCGCCCAAGCAAGGAGGCCGT---- 105401 Query 47334 ACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCT 47393 || |||| ||| | |||| ||||| | || ||| |||||| || |||| || Sbjct 105400 --CG-CAGC--CATCATCACCGAGGCCGTTACAATCGAGCAGGAGTTCTTGTCCGATGCC 105346 Query 47394 CTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTC 47453 ||||| | | | || |||||||| | | ||| | ||||||| || || ||| Sbjct 105345 CTGCCTTGTGCCCTGCTCGGCATGAACGCCGGTCTCATGTGCCAGTACATTGAGTTCGTC 105286 Query 47454 GCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTC 47513 |||||||||||||| | || | |||||| ||| || || || || ||| Sbjct 105285 GCCGACCGCCTGCTGCTGGCCCTCGGCAACCCCAAGCACTACAACGCCACCAACCCCTTC 105226 Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573 || || ||| | ||||| || || | |||||||||||||| |||||||||||||| || Sbjct 105225 GACTTCATGGAGAACATCTCTCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGT 105166 Query 47574 GAATA 47578 || || Sbjct 105165 GACTA 105161 >seq308 Length=314950 Score = 116 bits (128), Expect = 4e-21 Identities = 167/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| ||||| | |||| |||||| || | || ||||| || ||||| ||||| Sbjct 275379 TACTG-TCCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTA 275437 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | |||||| || || ||||| ||||| ||| | |||| |||||||| || Sbjct 275438 GTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTC 275497 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 || || || |||||||||||| ||| || ||||| | |||| ||||| || Sbjct 275498 AGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGA 275557 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || | || | || |||||||| || || || || ||||||||||| Sbjct 275558 CTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || ||||| || ||||| ||||| ||| Sbjct 275841 CCACCACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAG 275900 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||| | |||||||| || || || Sbjct 275901 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 275960 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||| | |||| |||| |||||| | |||||| Sbjct 275961 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTG-TCGATGGTGTCGGACGACTCGAC 276019 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| || | || || ||||||| Sbjct 276020 CTCGAGAGTGATGGTCTTTCCGGTCA 276045 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 275613 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 275672 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| |||| | |||||||| || ||||| Sbjct 275673 AGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275732 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || ||| ||| | | |||| ||||||| ||| || Sbjct 275733 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACC 275792 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || || || |||||||| Sbjct 275793 TCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 >seq334 Length=270071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 22360 CCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 22301 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| ||||||| |||||||| || || || Sbjct 22300 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 22241 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 ||||||||||||||| ||| || ||||| Sbjct 22240 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA 22210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498475989840