Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq332 122 8e-23 >seq332 Length=679357 Score = 122 bits (134), Expect = 8e-23 Identities = 402/620 (65%), Gaps = 9/620 (1%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC--GGAC 122955 ||||| ||||| || || || ||||||||||| |||||| | ||| | ||| ||| Sbjct 210242 AAGGTTGCCGAGCGCCCGCAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGAG 210183 Query 122956 GCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACG 123015 | |||| || || || | ||| || ||||| | ||||| || || | ||||| |||| Sbjct 210182 G--ACATTGAGAAGGCCATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACG 210125 Query 123016 CGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGC 123075 || || || | ||| |||||||| | || ||| |||| || || || | Sbjct 210124 CGTCGCCGACACTCTTCAATGCCGGCACACCATCCCCACAGATGTCATCCTGCTTCCTCA 210065 Query 123076 TCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGA 123135 || | || || |||||||| |||||||| || || || |||||||||| Sbjct 210064 TCGACATGAAGGAGGACAGCATTGAGGGTATCTACGACACGCTGAAGACCTGCGCGTTGA 210005 Query 123136 TTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCC 123195 | ||||| || ||||| || ||| | ||||| ||| | | | | | ||| Sbjct 210004 TCTCCAAGACTGCTGGCGGTATTGGCCTCAACGTCCACCGCATTCGTGCCACCGGCTCGT 209945 Query 123196 GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGCTGCGAGTTTACAAT 123254 ||| || | ||| |||||| | | || | || ||| ||||| || || ||||| Sbjct 209944 ACATTGGAGGAACCAACGGAA-CATCAAACGGTTTGATTCCTATGCTCCGTGTCTACAAC 209886 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTAT 123311 ||| ||| || | ||||||||||| || ||| ||| || || | || ||||| Sbjct 209885 AACACCGCCCGTTATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTAC 209826 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || |||||||||| ||| || | | || | | | | ||| || | Sbjct 209825 CTCGAGCCGTGGCACGCTGACGTCTTTGGCTTCCTCGACCTGAGGAAGAACCACGGCAAG 209766 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || || |||||| | || || ||||| ||| | |||||| | || |||| Sbjct 209765 GAGGAGGTTCGTGCTCGCGATCTCTTCTATGCTTTGTGGATTCCCGATCTCTTCATGCAG 209706 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGC 123491 || || |||| |||||| |||| | || ||||||||| | ||| || ||| | Sbjct 209705 CGTGTGCAAGAGAACGGCGAGTGGACCCTTATGTGTCCCAACGAGTGCCCTGGCCTCGCT 209646 Query 123492 GACGTTTACGGCAATCAGTT 123511 ||||| |||||| | |||| Sbjct 209645 GACGTCTACGGCGACGAGTT 209626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000990834360