Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq332 174 2e-38 >seq332 Length=679357 Score = 174 bits (192), Expect = 2e-38 Identities = 527/806 (65%), Gaps = 11/806 (1%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || || || || |||||||| || || |||||| || | |||||| || Sbjct 209419 GTGTACTCGATGATCTCAGTGCACAAATTCGAGCTGCGAATGGTACCGAGGTTCTTCTGG 209478 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| |||| ||||||||||||||||| | || | || ||||| || || Sbjct 209479 TTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGA 209538 Query 116593 GACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | || ||||| || | ||| | | || | || | ||||| || | || ||||| Sbjct 209539 GCCTCAAGAATGGCGTACCAGAGCTTCTG-AGCACGGACAGTCTCGCGACCACGACCCTC 209597 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 || ||||||||| ||| ||||| | ||||| || || | || | ||| || || Sbjct 209598 CTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGG 209657 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 || | ||||| | || | ||| | || ||| | || |||| ||||||||| Sbjct 209658 GCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTGCATGAAGAG 209717 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 116831 || || ||||| | || |||||||||| ||| ||| | || || | || || || Sbjct 209718 ATCGGGAATCCACAAAGCATAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTT 209777 Query 116832 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 116891 | || || | ||| | | || || ||||||||||| || ||||| | || | Sbjct 209778 CTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAA 209837 Query 116892 TGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCG 116948 | || ||| ||| |||||| ||||| | || || ||| | || || Sbjct 209838 AGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCGGTGTTGTTGTAGACACG 209897 Query 116949 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTG 117006 ||||| ||||| | ||| | ||| || || || || | || |||||| | | || Sbjct 209898 GAGCATAGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCAATGTACGAGCC--GGTG 209955 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | | ||||| || | |||||||| || || ||| ||||| ||||| Sbjct 209956 GCACGAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAG 210015 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | | || || ||||||| || || || ||| |||| | |||||||||||||| Sbjct 210016 GTCTTCAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAG 210075 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| ||||| |||||| || || |||||||| || || | |||||| |||| Sbjct 210076 GATGACATCTGTGGGGATGGTGTGCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAA- 210134 Query 117187 ATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAAT 117245 ||| | || ||||| | ||||| ||||| | | | |||||| ||| ||| || Sbjct 210135 GTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCAATGTCCTCCATGTGGAT 210194 Query 117246 ACCGATTGAGACCCGCATAAACATGT 117271 || | | ||| ||||| | ||||| Sbjct 210195 GCCAACAGCGACACGCATGAGCATGT 210220 Score = 107 bits (118), Expect = 2e-18 Identities = 316/485 (65%), Gaps = 14/485 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | ||| | | ||||||||||||||| || |||||||| | Sbjct 208472 TGAACTGAATAGGTGCAGAGGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGGC 208531 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | ||||||| || | ||||| || | | |||| | || || | |||| Sbjct 208532 CAAGCTTCCATCCAGCAAAGTGCATGGATGTGATCTTGCCCATGGTAGGCTCCTTCATGT 208591 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||||| | || || || || |||||| || || || || ||||| | || | Sbjct 208592 GAATGTTCAGAGACTGAGACTGGTCAATGAAGGCACCACGGTCAGCGGCCATCTGGATGA 208651 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 | | ||| ||||| || || ||||||| ||| || ||||| || || | Sbjct 208652 TGGTACGCTGCGAGATCTCCCAGACGGTCTTGTAGAGAACCTTGATCTCATCAGGAATGT 208711 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| ||||| || ||||| || | | |||| | | |||||| | || || Sbjct 208712 TAGGGATGCGCTGGATGGATCCACC---CTCGGCAATGATGCGGTTCTTCATGTTCTCTG 208768 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCT----CCACGAGGTGCTTATTGACAACAACAAAC 115878 ||||||||| || | ||||||| | || | | | ||||| || ||| Sbjct 208769 TCCAGAGACCCATGTCGACAAGATCCTTGAGCAACCAAGGG----TTGACGACCTGGAAC 208824 Query 115879 TCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938 || || || || || | ||||||||| | ||||| ||||| |||||||| ||| Sbjct 208825 TCTCCAGCAAGCACACGACGGGAATAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTG 208884 Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998 ||||| | || |||| || ||||| ||||||||||| || ||||| || ||||||| Sbjct 208885 TTACCAAGAATCTGGGAGGTAGAGGCAGTGGGCATGGGCGCAATGAGCAGAGAGTTGCGG 208944 Query 115999 AGACC 116003 | ||| Sbjct 208945 ACACC 208949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504201483560