Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq332 174 2e-38 seq289 138 2e-27 >seq332 Length=679357 Score = 174 bits (192), Expect = 2e-38 Identities = 456/684 (67%), Gaps = 14/684 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 || || ||||||||||| | || || ||||| | || ||| || |||||||| || || Sbjct 208465 TCGACAGTGAACTGAATAG-GTGCAGAGGCAGCCATGGTTCGGAGGTAGTACATTCCAGT 208523 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| ||||| || ||| || | ||||||||| | | |||| || | | || || Sbjct 208524 CTTGAGGCCAAGCTTCCATCCAGCAAAGTGCATGGATGTGATCTTGCCCATGGTAGGCTC 208583 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 ||||||||||||||||||||| ||||| ||| ||||| || || || ||||||| Sbjct 208584 CTTCATGTGAATGTTCAGAGACTGAGACTGGTCAATG-AAGGCACCACGGTCAGCGGCCA 208642 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | ||| ||||| |||||| |||||||| || |||||| | | | || | | | Sbjct 208643 TCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTAGAGAACCTTGATCTCAT 208702 Query 204081 GAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 ||| | | | | | || ||| || || ||||| || | | || || | Sbjct 208703 CAGGAATGT-TAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATGCGGTTCTTCATG 208761 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | ||| ||| | |||| || || ||| | || ||||||| || ||| Sbjct 208762 TTCTCTGTCCAGAGACCCATGTCGACAAGATCCTTGAGCAACCAAGGGTTGACGACCTGG 208821 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || ||||| | ||||| | |||| | | ||| |||| | || ||||| |||| Sbjct 208822 AACTCTCCAGCAAGCACACGACGGGAATAGATGTTCGAGGTGTAAGGCTCGAAGCACTCG 208881 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 ||||| || | |||||| | ||| ||| ||||||||||| || | |||||| |||||| Sbjct 208882 TTGTTACCAAGAATCTGGGAGGTAGAGGCAGTGGGCATGGGCGCAATGAGCAGAGAGTTG 208941 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGT 204379 || ||||||| | || | || |||||| |||| |||||| | || |||| Sbjct 208942 CGGACACCGTGCTGGGCGATCTTGTCCTTCAGCGAGGCCCAGTCCCAGAGATCAGTGGGG 209001 Query 204380 TTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTC 204439 | ||||||||||||||| |||| | ||| || || || ||| | |||||| Sbjct 209002 GTGACGCCCCACATGTCGTACTGCAGCTGGCCCTGCGAAACAGGCGAGCCTTCGTACGTA 209061 Query 204440 GGATAAGGCTGATCCTCTTCTGCCAG-CTTGCACGAGGCGGCCA---TGGCGTGATAGTA 204495 | ||||| | ||| | || ||| || ||| || | || || |||||| || Sbjct 209062 GCGTAAGGACCAAGCTCCT-TGGCAGTCTCGCAAGAAGAGGTCAGAGCAGCGTGA---TA 209117 Query 204496 CATGGTCTCAAAGATCTGAACGTT 204519 |||||||| |||||||| | ||| Sbjct 209118 AATGGTCTCGAAGATCTGGATGTT 209141 Score = 93.3 bits (102), Expect = 7e-14 Identities = 359/549 (65%), Gaps = 14/549 (3%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || ||| || || || || || ||||| ||||| || || || || Sbjct 209601 CTCGTACTTCTCGTAAAGGGCAACGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCA 209660 Query 205120 TTTTTTGGGACACATCAGAGACCAC-ATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | ||||||||||| || | |||| | | || |||| ||| | || ||| || || | Sbjct 209661 CTCGTTGGGACACATAAGGGTCCACTCGCCGTTC-TCTTGCACACGCTGCATGAAGAGAT 209719 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||||| | || || ||||| || || | || | || | || |||||| Sbjct 209720 CGGGAATCCACAAAGCATAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCT 209779 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | ||| ||| || ||||| | | ||| |||||||||||||| | | | ||| | Sbjct 209780 TCCTCAGGTCGAG-GAAGCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAA 209838 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || || | |||||| ||||||||||| || || | | |||| | || || Sbjct 209839 GCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGG 209898 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || | || |||||| | || ||||| || | ||| |||||| || Sbjct 209899 AGCATAGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCA 209958 Query 205418 CTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-C 205474 | | || |||| | | |||||| ||||||| | ||||| |||| ||||| Sbjct 209959 CGAATGCGGTGGACGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGG 210016 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCA 205533 |||| ||| ||| |||||| || | ||| || ||| || |||| | || |||| Sbjct 210017 TCTT-CAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCA-TGTCGATGAGGAAGCA 210074 Query 205534 CGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 || | || || ||| | | | ||||| || | |||||| || || ||||| ||| Sbjct 210075 GGATGACATCTGTGGGGATGGT-GTGCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGA 210133 Query 205593 AGCGCTTCT 205601 || ||||| Sbjct 210134 AGTACTTCT 210142 >seq289 Length=227737 Score = 138 bits (152), Expect = 2e-27 Identities = 333/500 (67%), Gaps = 13/500 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||||| |||| ||||| Sbjct 105175 CTTCTCGAAGAAGTTGGTCTTGCCAGCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 105234 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| || ||||| ||| ||||| | ||| || || || || Sbjct 105235 GGTGGCGTTGTAGTGCTTGGGGTTGCCGAGGGCCAGCAGCAGGCGGTCGGCGACGAACTC 105294 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| ||||| | | ||| || || ||||| | || || || || || Sbjct 105295 AATGTACTGGCACATGAGACCGGCGTTCATGCCGAGCAGGGCACAAGGCAGGGCATCGGA 105354 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT--CTGCGA--GACACGTTCGT 159884 || ||||||| ||| || || || ||||| | || |||||| | | | || | Sbjct 105355 CAAGAACTCCTGCTCGATTGTAACGGCCTCGGTGATGATGGCTGCGACGGCCTCCTTGCT 105414 Query 159885 ACCCCGGCTTGCCCAA-AATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 ||| ||| || || | | || || ||||| ||||||||| ||||| Sbjct 105415 TGGGCGG-TTGTTCAGCAAAGAG-------AAGAGAAGGCAAGCAAAGTCGGTGTGCATG 105466 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| |||||||||| ||||||||| | |||| || ||||| | |||||| Sbjct 105467 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATAAGACCACGCTTC 105526 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 || ||||| || |||| ||| || | |||||| || ||||| || || || || || || Sbjct 105527 TTCAGCCAGAAGATGGACGCGAACGAACCGCTGAAGAAGATGCCTTCAACAGCAGCGAAA 105586 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || || || | | | || | | ||| |||| | |||| | |||||| ||| Sbjct 105587 GCGACAAGGCGGTTGGCGAAGGTAGAGTTCTTGTCCGAGATCCATCGCAGGGCCCAATCA 105646 Query 160124 GCCTTCTTTGCGATGCACGG 160143 |||||||| |||||| || Sbjct 105647 GCCTTCTTGCGGATGCAGGG 105666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151313678960