Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq308 147 5e-30 seq306 120 7e-22 seq334 96.9 8e-15 >seq308 Length=314950 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||||||||||||||| |||| ||||||||| | || ||| Sbjct 276129 CGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 276188 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||| | ||||||||||| ||| ||| ||| Sbjct 276189 CGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCT 276248 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| || | | || || || | Sbjct 276249 TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAGG 276308 Query 199589 GTGATCGTCTTACCCGTGA 199607 |||||||||||||| |||| Sbjct 276309 GTGATCGTCTTACCGGTGA 276327 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||| || || || |||||||| || | ||||||||| | | || Sbjct 275847 CGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 275906 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || |||||||| |||||||||||||| || ||| || Sbjct 275907 CGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCC 275966 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | | || || || | Sbjct 275967 TCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGA 276026 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 276027 GTGATGGTCTTTCCGGT 276043 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | || | || || Sbjct 275628 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCC 275687 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||||||||||||||||||| || || || ||| Sbjct 275688 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 275747 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||||| | | || || || | ||||| ||| Sbjct 275748 TGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTC 275807 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 275808 TTGCCAGTCAAGGTCTTGACGAAGATCTG 275836 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| |||||||| || | ||||||||| | | || Sbjct 275391 CGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTG 275450 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||||||||| ||||| || || ||||||||||| || || || Sbjct 275451 CGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCC 275510 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || ||||| Sbjct 275511 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAACCTCCAAT 275570 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || ||||| || Sbjct 275571 GTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTG 275608 >seq306 Length=305464 Score = 120 bits (132), Expect = 7e-22 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||||||||||||||| |||| ||||||||| | | ||| | ||||| Sbjct 48708 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 48649 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||||||||||||||||||||| Sbjct 48648 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 48608 >seq334 Length=270071 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||| | | ||| | || || Sbjct 22345 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 22286 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | |||||||||||||| ||| || || ||| Sbjct 22285 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22226 Query 199538 TGAATCTT 199545 || ||||| Sbjct 22225 TGGATCTT 22218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915693971197