Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq289 172 5e-38 seq308 122 9e-23 seq306 104 2e-17 seq334 96.9 3e-15 >seq289 Length=227737 Score = 172 bits (190), Expect = 5e-38 Identities = 204/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| || || | || | ||| ||||||||||| || || || Sbjct 105768 GTAGGTGTCGATGAGGAGAGAGTATGTCTCGGCGTGGACGTTCTCCATCATAATCTGGAA 105827 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| | ||| || || || ||| |||||||| || || Sbjct 105828 GCCGTAGAAGCATCGTGCCTCGGGGATCTGTACCTCGCCAGAGAAGCGCTCGACAAGGTT 105887 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||||||| ||| ||||| || || || ||||| |||||| || Sbjct 105888 CTCGTTGACAATGCCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAACG 105947 Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||||| | ||| | ||||||| | ||||||||| || || | |||||| Sbjct 105948 CTCGTCATCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTC 106007 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 106008 TGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 106043 Score = 163 bits (180), Expect = 3e-35 Identities = 330/483 (68%), Gaps = 14/483 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 105176 TTCTCGAAGAAGTTGGTCTTGCCAGCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 105235 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||||||||||| |||||| || | | ||||| | |||||| |||||| Sbjct 105236 GTGGCGTTGTAGTGCTTGGGGTTGCCGA---GGGCCAGCAGCAGGCGGTCGGCGACGAAC 105292 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTC 132800 || ||||| || ||||| || || | || ||||| |||| ||||| || || Sbjct 105293 TCAATGTACTGGCACATGAGACCGGCGTTCATGCCGAGCAGG-GCACAAGGCAGGGCATC 105351 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 || | || |||||||| | || || ||||||| ||| | ||| | || Sbjct 105352 GGACAAGAACTCCTGCTCGATTGTAACGGCCTCGGTGATGATGGCTGCGACGGCCTCCTT 105411 Query 132861 GCTCGGCCG-TTG--CACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917 ||| || || ||| || |||| ||| | | ||||||||||||| |||| ||| Sbjct 105412 GCTTGGGCGGTTGTTCAGCAAAGA---GAAGAGAAGGCAAGCAAAGTCGGTGTGCATGCC 105468 Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 |||||| | || ||||| |||||| ||| || | |||||||| || || || || || Sbjct 105469 CTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATAAGACCACGCTTCTT 105528 Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037 ||||| || |||| ||||| || ||||||| ||| || || || |||||||| Sbjct 105529 CAGCCAGAAGATGGACGCGAACGAACCGCTGAAGAAGATGCCTTCAACAGCAGCGAAAGC 105588 Query 133038 CACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 || ||||| | | |||| || | | ||| | |||||| ||||| ||||| || || Sbjct 105589 GACAAGGCGGTTGGCGAAGGTAGAGTTCTTGTCCGAGATCCATCGCAGGGCCCAATCAGC 105648 Query 133098 CTT 133100 ||| Sbjct 105649 CTT 105651 >seq308 Length=314950 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || || ||| | | | Sbjct 275611 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 275552 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || || | ||||| Sbjct 275551 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 275492 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || |||| ||||| ||| ||||||||| Sbjct 275491 CAGCGCCTGATTTTCGCAGGAAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAAC 275432 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || ||||| |||||||||||| || | || || Sbjct 275431 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTGCGCGGAGG 275385 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || |||||||| |||| |||||| | |||||| | | | |||| | || Sbjct 276043 ACCGGAAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACG-TGAAGTC 275985 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| |||||| | ||||| ||||| || || | ||| || || Sbjct 275984 GAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTCGCTGGTAA 275925 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | ||||||||| |||||||||||| || ||||| | || ||||| Sbjct 275924 GCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACACTGCA 275865 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || |||||| || | || || Sbjct 275864 TCTTGTCCTGCGTCTGCGTGGTGG 275841 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || || ||| | | Sbjct 275839 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACACTTGAGGTTGAGTCGTCG 275780 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | || || ||||| || || | ||||| Sbjct 275779 GACACAATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCA 275721 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || || || ||||||||| Sbjct 275720 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACACTTTCCGACTACAA 275661 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || ||||| || ||| Sbjct 275660 CATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGT 275624 >seq306 Length=305464 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| ||||| || Sbjct 48590 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 48649 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| ||| ||||||||||||||| ||||| |||| || || ||||||| Sbjct 48650 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTC 48709 Query 38457 CG 38458 || Sbjct 48710 CG 48711 >seq334 Length=270071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| ||||| Sbjct 22218 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 22277 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || ||||||||||||||| ||||| |||| || || Sbjct 22278 CAGCTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 22337 Query 38448 TTGGTGCTGCG 38458 ||||| || || Sbjct 22338 TTGGTCCTCCG 22348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170355405440