Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq308 407 2e-108 seq204 105 8e-18 >seq308 Length=314950 Score = 407 bits (450), Expect = 2e-108 Identities = 1041/1584 (66%), Gaps = 23/1584 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| || || || || || || Sbjct 120429 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCAAGCATGCGCTCGATCTCCTCCTTGGAG 120370 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| || || ||||| | || ||||| | |||| || | Sbjct 120369 AGACGGCCCTTGTCATTGGTGATGACGATCTTGTTGGTCTTACCGGTACCCTTCTCGAGA 120310 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || |||||||||||||| | || | ||| || || | Sbjct 120309 GCGGAGACGTTCATGATACCGTTGGCATCAACATCGAAGGTAACCTCAATCTGAGGGACA 120250 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | || || | || || || |||| ||| | Sbjct 120249 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCGAACTTGCCGAGCAAGTTGTTGTCCTTT 120190 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | ||| ||||| || ||||| | ||| || |||| || || || Sbjct 120189 GTGCGAGCACGCTCACCCTCGTAGACCTGAATGAGGACACCAGGCTGGTTGTCGCTGAAG 120130 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | ||||| || || || | | || | | ||| Sbjct 120129 GTGGAGAAGACCTCGGACTTCTTGGTGGGAATAGTGGTGTTGCGCTTGATGAGAGCAGTC 120070 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986 || | |||||| ||| |||| || ||||| || || | ||||| | || | | Sbjct 120069 ATGACACCACCAGCAGTCTCGATACCGAGAGAGAGCGGCGAAACGTCGAGAAGGAGAATC 120010 Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || |||| | |||| || |||| | | ||| ||||| ||||| | Sbjct 120009 TCGTTGGTGGACTTGGA-AGATGTGT------CACCAGACAGGATAGCGGCCTGGACGGC 119957 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || ||||| || || |||||||||||||| || | || || | || || ||||| || Sbjct 119956 AGCACCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAA 119897 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 | || || | ||| | |||| || || || || || || |||||||| | |||||| Sbjct 119896 GAAGTCGGAGACCATCTTCTGAACCTTGGGAATACGGGTGGAGCCACCGACGAGAACGAT 119837 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | || || || |||||||| | ||| || || ||||| || ||||| Sbjct 119836 CTCGTGGACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACACGCTCGACGGGCTCCAT 119777 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 ||||| | |||| || || ||||| ||||| |||||||| || || || || Sbjct 119776 GGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATCGAGGTGTA 119717 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| |||| || ||||| | || || || ||||||| || || || | ||||| | Sbjct 119716 GAAGTCAATACCCTCGTACAGGGAGTCGATCTCAATGGAGGTCTGAGCAGAGGAAGAGAG 119657 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || ||||| || || || || | |||||| || ||||| | ||| || Sbjct 119656 GGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAGCGTTGGAGGT 119597 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||||| || || || || ||||| | | |||||| | ||| | || Sbjct 119596 AAGGTCCTTCTTGTGCTTTCGCTTGAACTCATTTGTGAAGTGGTTGACGAGACGGTTGTC 119537 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || |||||||||||||| || || || || || | ||||| || |||||||| | Sbjct 119536 GAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCTC 119477 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| | || | || ||||| || |||||||| |||| ||| || ||||| ||||| Sbjct 119476 CTCGATGGTCAAGAGGGAGACATCGAATGTACCACCTCCCAAGTCGAAGATGAGGACGTT 119417 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || | || | ||||| || |||||||| || || || || || || || || || Sbjct 119416 GCGCTCACCCTCAGTCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTT 119357 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| || ||| ||||| ||||| | ||||| || || || || || || Sbjct 119356 GATGATACGGAGGACGTTGAGGCCGGCAATGAGACCAGCATCCTTGGTAGCCTGACGCTG 119297 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| |||||||| || || || ||||| |||| |||| | |||||| || Sbjct 119296 GGAGTCGTTGAAGTAGGCGGGAACTGTGACGACAGCGTTGTTGACGGTTCCACCGAGGTA 119237 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 || || ||| | || |||| ||| || ||||| || || ||||| |||| | || Sbjct 119236 GGACTCAGCGGTCTCCCTCATCTTGACGAGGACCATGGAGGAGATCTCCTCAGGTGTGAA 119177 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 ||| || || || || || || | || | || || |||| | || Sbjct 119176 GGTCTTCTCCTCGCCCTTGAACTCGACCTGGATGACAGGCTT---GCCAGCCTTGTCAAT 119120 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938 ||||| | | | | ||||||||| | ||||||| || ||||| | || Sbjct 119119 GACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGTTGAACTTGCGACC 119060 Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998 || || ||||| || || || |||||||| | ||||||||||| ||||||||||| Sbjct 119059 AATGAGGCGCTTGGCGTCGAAGACTGTGTTGATAGGGTTCATGGCGACCTGGTTCTTCGC 119000 Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 | ||| ||||| ||||| || | | || || || || ||| | || || || || | Sbjct 118999 GGAGTCACCGATGAGACGCTC---AGTGTCGGTGAAGGCAACGAAGGACGGTGTTGTCCT 118943 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 || || |||||||| || ||||| || | |||||| | ||| ||||||||| || Sbjct 118942 GTTACCCTGGTCGTTTGCGATAATCTCAATGCGGTCATCCCTGAAGATGCCGACGCAAGA 118883 Query 8119 ATACGTTGTTCCTAAATCAATACC 8142 || ||||| || | ||||||||| Sbjct 118882 GTAGGTTGTACCGAGATCAATACC 118859 >seq204 Length=97000 Score = 105 bits (116), Expect = 8e-18 Identities = 235/353 (67%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| | | || || || | || Sbjct 31535 TCGAAATCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGACTGAACCTCGAAAACGCCG 31594 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || | | || || Sbjct 31595 TCCTCAATGGTGAGGATGGAGACATCGAAAGTACCACCACCAAGATCGTAGACAAGAACC 31654 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || | | | | ||| || ||||||||||| | ||| || || || || || Sbjct 31655 TGGCGCTCCTTCTGGTCGACCTTGTCAAGACCGTACGCAAGAGCGGCGGCGGTAGGCTCG 31714 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || ||| ||| || ||||| ||||| | || || || || || || Sbjct 31715 TTGACAACGCGGAGAACGTTAAGACCAGCGATAGTACCGGCGTCCTTGGTGGCAGCGCGC 31774 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| || || || || || |||| | |||| | || || || Sbjct 31775 TGAGCGTCGTTGAAGTAGGCGGGAACAGTGACAACGGCGTTCTTGACCTCCTCGCCCAGG 31834 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || | || ||||| ||| ||||||||| | || ||||| || Sbjct 31835 TAGCTCTCAGCAACCTCCTTCATCTTGCCAAGAACCATAGCGGAGATCTCCTC 31887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129695788440