Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq180 132 6e-26 seq332 131 2e-25 >seq180 Length=78447 Score = 132 bits (146), Expect = 6e-26 Identities = 339/501 (68%), Gaps = 25/501 (5%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | ||||| | || || | ||| ||| || ||| | || Sbjct 3343 TCGAAACGGCCGGGACGCATGAGAGCCTTGTCGAGGACGTCGGGACGATTGGTACCAGCC 3402 Query 11566 ATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| || | || | |||| || | ||| |||||||| || || || | ||||||| Sbjct 3403 AGGACGACGA--CCTG-CTCAGTGGTGTTGAAGCCGTCCATCTCAGTAAGGATCTGGTTG 3459 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GCATACCACCTGCC--GAACGCTTCTTACCG 11679 | ||| || || || |||||| | || | |||| |||||| ||| Sbjct 3460 AGCGTGGCCTCGCGTTCGTCGTTGCCGCCGCCGAAGTTCTGCTTGGAACGCGAGCGGCCG 3519 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT--GTT--C 11735 | ||||||||||| || ||||| | ||| ||||| ||| || | ||| | ||| | Sbjct 3520 ATGGCGTCAATCTCGTCAATGAAGATGATGCACGG--GGT--GCTCTTGCGTGCGTTGGC 3575 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793 ||| | || || || ||| || |||||||| ||||||||||| ||||| | || | Sbjct 3576 GAACAAGTCGCGCACTCGCGAGGCACCAACACCGACGAACATCTCGACGAACTCTGAACC 3635 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || || ||||| |||||| || |||||| || || |||| || || | |||| Sbjct 3636 GC-TCACGCTGAA-GAAGGGCACGCCAGACTCGCCGGCAGTGGCCTTGGCCAGCAAAGTC 3693 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911 ||||| ||||| || | ||||| || | ||||| || ||||||||||| || ||||| Sbjct 3694 TTACCGGTACCGGGGGGACCAGACAGGACAGCGCCGCGAGGGATCTTGGCTCCCAACTTC 3753 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 | |||| | || | |||||||||| ||| | |||| | |||| |||||| Sbjct 3754 --TGGAAGCGGGCGGGATCCTTGAGGAAGGACACGAACTCCATGATCTCCTGCTTGGCCT 3811 Query 11972 AGTCGATACCCTCAACATCGG 11992 ||| || || |||| |||| Sbjct 3812 CGTCCATGCCGGCAACGTCGG 3832 >seq332 Length=679357 Score = 131 bits (144), Expect = 2e-25 Identities = 304/454 (67%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || ||||| ||| ||||||| | | ||||| || | | Sbjct 208504 CGGAGGTAGTACATTCCAGTCTTGAGGCCAAGCTTCCATCCAGCAAAGTGCATGGATGTG 208563 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || || || ||| | ||||| ||||||||||| || ||||| Sbjct 208564 ATCTTGCCCATGGTAGGCTCCTTCATGTGAATGTTCAGAGACTGAGACTGGTCAATGAAG 208623 Query 109528 CGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTA-ATTTCCCAGACAGT 109583 |||||| ||||| ||||| | ||||| ||| || || | || |||||||| || Sbjct 208624 GCACCACGGTCAGCGGCCATCTGGATGATGGTACGCT----GCGAGATCTCCCAGACGGT 208679 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | | |||||| ||||| ||||||| |||| || || || ||||| | Sbjct 208680 CTTGTAGAGAACCTTGATCTCATCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTC 208739 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT---- 109699 | ||| | | |||||| | | | ||||||||| | | ||||| | Sbjct 208740 GGCAATGATGCGGTTCTTCATGTTCTCTGTCCAGAGACCCATGTCGACAAGATCCTTGAG 208799 Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759 |||| | | | |||||| || || || |||||||| || ||| ||||||| Sbjct 208800 CAACCA-AGG---GTTGACGACCTGGAACTCTCCAGCAAGCACACGACGGGAATAGATGT 208855 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | | ||||| || ||||| ||||| ||||| || || || || | || || || |||| Sbjct 208856 TCGAGGTGTAAGGCTCGAAGCACTCGTTGTTACCAAGAATCTGGGAGGTAGAGGCAGTGG 208915 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||||| || ||||| ||| ||| |||| ||| Sbjct 208916 GCATGGGCGCAATGAGCAGAGAGTTGCGGACACC 208949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973121379800