Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq332 226 3e-54 >seq332 Length=679357 Score = 226 bits (250), Expect = 3e-54 Identities = 556/834 (67%), Gaps = 13/834 (2%) Strand=Plus/Plus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||| ||||| |||||| | |||||||| | || || || ||||| || || Sbjct 209392 TTGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAAATTCGAG 209451 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 || ||| || || | ||||| ||||| ||||| ||||| ||||||||||||||| Sbjct 209452 CTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGC 209511 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGC 106656 ||| |||| | || ||||| ||||| | || ||||| || | ||| | | || | || Sbjct 209512 ATGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTG-AGC 209570 Query 106657 TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 106716 | ||| | || | || |||||| ||||||||| ||| ||||| | ||||| Sbjct 209571 ACGGACAGTCTCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTC 209630 Query 106717 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 106776 || || |||| | ||| || || || || ||||| | ||| | ||| | || Sbjct 209631 GTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCC 209690 Query 106777 ACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 ||| | || |||| |||||| || || |||||||||| | | |||||||| | Sbjct 209691 GTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGCG 209750 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 | ||| |||| || | || ||||| | | || ||||| | | || || || Sbjct 209751 AGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGC 209810 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTA 106952 |||||| ||||| || |||| || | || || | | | | ||| | || | | Sbjct 209811 GTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTG-CCACCCTGGTCGA 209869 Query 106953 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 107012 |||| || || ||| ||| | || || ||||| ||||| | ||| | |||| || | Sbjct 209870 CATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGT 209929 Query 107013 TTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 | || || | || |||||| |||| | | |||| || | |||||||| Sbjct 209930 TGGTTCCTCCAATGTACGAG--CCGGTGGCACGAATGCGGTGGACGTTGAGGCCAATACC 209987 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 ||||| ||| ||||| ||| || | | || || | |||||||| | || Sbjct 209988 GCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCT 210047 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||||||||| || |||| |||||||| |||||||| || |||||| || ||||| Sbjct 210048 GTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCCGGCATT 210107 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCA 107249 |||||| || || | ||||| |||| ||| | || ||||| | |||||||||||| | Sbjct 210108 GAAGAGTGTCGGCGACGCGTGTGTGAA-GTACTTCTGCGACATGTAGTCGTATGTCTCGA 210166 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | |||||||| ||| ||||||||| | || |||||||| | ||||| Sbjct 210167 TGGCCTTCTCAATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGT 210220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977916468840