Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq308 158 3e-33 seq306 104 5e-17 >seq308 Length=314950 Score = 158 bits (174), Expect = 3e-33 Identities = 146/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||| |||| ||||| | ||||| ||| Sbjct 276141 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCG 276200 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || || |||||||||||||||||||| ||||| || Sbjct 276201 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 276260 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||| |||||| ||||| |||||||| | |||||| Sbjct 276261 ATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTA 276320 Query 195112 CCTGT 195116 || || Sbjct 276321 CCGGT 276325 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| |||||||| || || || ||||| |||| ||| || | || || || Sbjct 275630 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCCTC 275689 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||||||| |||||||| || || || ||||| ||||| ||||| || || || || Sbjct 275690 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTG 275749 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || || |||||||| || || ||||| || | ||||| Sbjct 275750 AATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTCTT 275809 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 275810 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 140 bits (154), Expect = 7e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || ||||| ||||| |||| || || | |||||||| Sbjct 275859 ACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 275918 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||||||||| || || |||||||| ||||| || || ||||| || Sbjct 275919 AGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 275978 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| || || || || || || | |||||| Sbjct 275979 ATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTT 276038 Query 195112 CCTGTCA 195118 || |||| Sbjct 276039 CCGGTCA 276045 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || ||||| ||||| || | || || | || || || ||||| Sbjct 275408 GTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTG 275467 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| |||||||| || || || || ||||| || || || || || ||||| || || || Sbjct 275468 CTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 275527 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||| || || || ||||| Sbjct 275528 GGACTTGACATTGTCGATTGTGTC 275551 >seq306 Length=305464 Score = 104 bits (114), Expect = 5e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| |||| ||||| | ||||| ||| Sbjct 48705 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCG 48646 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| || || || ||||| || |||||||| || |||||| Sbjct 48645 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 48589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476041843897