Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq308 98.7 6e-16 >seq308 Length=314950 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| | || | || |||||||| | ||| || ||||||||||| |||||||| Sbjct 275384 TCCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGA 275443 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | || | || || ||||| ||||| || || || || || |||||||| | || Sbjct 275444 GAGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGG 275503 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | ||||||||||| ||||| ||||| || | ||||| || | | || Sbjct 275504 GATACCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--TGTCGATTGTGTCGCTAGACT 275559 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | || ||||| || || ||||| ||||| || || ||||||||| Sbjct 275560 CAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCATA 275612 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||| ||||| ||||| ||||| | || | || || Sbjct 275630 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCCTC 275689 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | |||||||| || Sbjct 275690 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTG 275749 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| || || | ||||||| | ||| | |||||| || | || || | Sbjct 275750 AATCTTCGACTTCAC----GTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAG 275805 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || | ||||| || |||||||||||| Sbjct 275806 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 275840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632053019448