Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq332 311 2e-79 seq289 165 2e-35 >seq332 Length=679357 Score = 311 bits (344), Expect = 2e-79 Identities = 1204/1868 (64%), Gaps = 64/1868 (3%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||| |||||| |||| || || |||||||| || ||||| Sbjct 208468 ACAGTGAACTGAATAGGTGCAGAGGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTG 208527 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 ||||| ||| ||| || | |||||| | ||||| |||| || | Sbjct 208528 AGGCCAAGCTT---CCATCCAGCAAAGTGCATGGATGTGA---TCTT--GCCCA------ 208573 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | ||| | || || | |||||| |||||| |||||| ||||| | | Sbjct 208574 TGGT-AGGCTCCTT---CATGTGAATGTTCAGAGACTGAGACTGGTCAATGAAGGCACCA 208629 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | |||||||||||| | ||||| | ||| |||| |||||| ||||||||| ||| Sbjct 208630 CGGTCAGCGGCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTAGAGA 208689 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TGGTC 212846 | |||| || || || | | |||||| ||| | || || ||| | | || | Sbjct 208690 ACCTTGATCTCATCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATG 208749 Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906 | | | ||||| ||| ||||||| ||| || | || ||||| || | Sbjct 208750 CGGTTCTT---CATGTTCTCTGTCCAGAGACCCATGTCGACAAGATCCTTGAGCAACCAA 208806 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | ||||| | | || | ||| || ||||| Sbjct 208807 GGGTTGACGACCTGGAACTCTCCAGCAAGCACACGACGGGAATAGATGTTCGAGGTGTAA 208866 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||||| || |||||||| | || ||| ||||||||||| || Sbjct 208867 GGCTCGAAGCACTCGTTGTTACCAAGAATCTGGGAGGTAGAGGCAGTGGGCATGGGCGCA 208926 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 | || ||| ||| | || ||||||| | |||| | | ||| ||||||||| Sbjct 208927 ATGAGCAGAGAGTTGCGGACACCGTGCTGGGCGATCTTGTCCTTCAGCGAGGCCCAGTCC 208986 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || ||| || | ||| ||||||||| |||||| | || | || Sbjct 208987 CAGAGATCAGTGGGGG---------TGACGCCCCACATGTCGTACTGCA-GCTGGCCCTG 209036 Query 213147 CTCACGGGGCT-GCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | | ||| ||| | ||| | | ||| || ||| |||||||||| |||||| || Sbjct 209037 CGAAACAGGCGAGCCTTCGTACGTAGCGTAAGGACCAAGCTCCTTGGCAGTCTCGCAAGA 209096 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 | ||| ||||||| || ||||| || || |||| ||||||||||||| ||||| Sbjct 209097 AGAGGTCAGAGCAGCGTGATAAATGGTCTCGAAGATCTGGATGTTGAGCTTCTTAGCCTC 209156 Query 213266 TGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 || ||| ||| |||| | ||| |||| | ||||| || || ||||| || | Sbjct 209157 AGGTGACTCGAAAGGCAAGCGAAGAGCGA-GGAAAGCGTCAGCAAGACCTTGGACACCAA 209215 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTG 213383 || || || ||||| | | ||| | | || |||||| | ||| || ||| Sbjct 209216 GACCAATAGGCCTGTGACGGAAGTTGCTGCGGCGTGC-CTCCTCAACGGGATAGTGGTTA 209274 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG 213443 |||||||||||||| || ||||| ||| || | ||| | | || | || | Sbjct 209275 ACCTCGATGATCTTGTTAAGATTGCGAGTGCAGACCTGCACGACCTCGTGAAGCTTCTTG 209334 Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 || |||| | | | || | || || ||||| || | | ||| |||||| Sbjct 209335 AAATCGAACTCTCCACGCTTGTAGTCGACGAAGGAGGGCAGAGCAACGGAGGCAAGGTTG 209394 Query 213504 CAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563 || || || ||||| | || | |||||||| |||||||| ||||||| || || Sbjct 209395 CAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAAATTCGAGCTG 209454 Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATG 213623 || ||||| || ||||||| ||||| ||| |||||||| |||||||||||||||| Sbjct 209455 CGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATG 209514 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTG 213683 ||||| || ||||| ||| | | | || || | |||||| | | || | Sbjct 209515 AAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGG 209574 Query 213684 ACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCG 213743 || | | | ||| | | | | |||||||| ||||| || | ||| ||| Sbjct 209575 AC-AGTCTCGCGACCACGACCCTCCTT--CTCGTACTTCTCGTAAAGGGCAACGAACTCG 209631 Query 213744 TGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803 | ||| |||| | || || || || ||||||||| ||| |||| || ||| Sbjct 209632 TCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCG 209691 Query 213804 TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863 | ||| || | ||||||||| || || || | ||||| || ||| || || | Sbjct 209692 TTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGCGA 209751 Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923 | | ||| ||| || ||| || | ||| || || ||| |||||| ||| ||| Sbjct 209752 GCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGCG 209811 Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACC 213980 ||||||||||| | |||||||||||| || || | || | ||||| |||||||| || Sbjct 209812 TGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCGACA 209871 Query 213981 AGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040 | ||| ||||| ||| || || | || | || ||||| || ||||||| Sbjct 209872 TAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGTTG 209931 Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100 ||||| | || |||||||||| ||| | | | | | | ||| || || || || Sbjct 209932 GTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGAGGCCAATACCGCCA 209991 Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCA 214160 || ||||||||||| |||||| | ||| || || ||| || | |||||||| Sbjct 209992 GCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCTGTCC 210051 Query 214161 TCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTG-GGGCCTGGACGAGCCAGAGTTGAA 214219 || | | || | | ||||||| || | ||| ||| ||| | ||| | ||||| Sbjct 210052 TCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGG-TGTGCCGGCATTGAA 210110 Query 214220 AAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA-GGAGCCTGTAGGTCTCCAGGA 214278 || || || || || | | |||| | || | | || | ||| ||||| | | Sbjct 210111 GAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTC-GTATGTCTCGATGG 210169 Query 214279 CTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCC 214338 | ||||| | | ||||||| | |||| | ||| ||||||||||| || | Sbjct 210170 CCTTCTCAATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGCTGCGGGC 210229 Query 214339 TCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGA 214392 ||| | |||| ||| || |||||| || ||||||||||| ||||||| Sbjct 210230 GCTC--GGCAACCTT----GCCATTGATGCGGAGCAGATATGAGCGCTCCAGGGTCTTGA 210283 Query 214393 ACCCAAAG 214400 | || ||| Sbjct 210284 AGCCGAAG 210291 >seq289 Length=227737 Score = 165 bits (182), Expect = 2e-35 Identities = 351/519 (68%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 105157 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGAGAGATGTTCTC 105216 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | ||| || | | ||| | |||||| Sbjct 105217 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTGGGGTTGCCGAGGGCCAGCAGCAG 105276 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||| ||||| | ||||||| | ||||||||| | |||| Sbjct 105277 GCGGTCGGCGACGAACTCAATGTACTGGCACATGAGACCGGCGTTCATGCCGAGCAGGG- 105335 Query 48019 CACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| |||| || | | | ||||||| ||| || ||||| || | || Sbjct 105336 CACAAGGCAGGGCATCGGACAAGAACTCCTGCTCGATTGTAACGGCCTCGGTGATGATG- 105394 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCAT-----GCA 48132 ||| || || ||| || ||| || | || | ||| |||| | ||| Sbjct 105395 GCTG--CGACGGCCTCC-----TTGCTTGGGCGGTTGTTCAGCAAAGAGAAGAGAAGGCA 105447 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||||| |||||| ||| ||||| || ||||||| |||||||||| |||||| Sbjct 105448 AGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTGAGACC 105507 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || |||||||| || | |||||| || || ||||||||| Sbjct 105508 GGGCATAAGACCACGCTTCTTCAGCCAGAAGATGGACGCGAACGAACCGCTGAAGAAGAT 105567 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||| || || || ||||| ||| || | | |||| | || ||||||||| ||||| Sbjct 105568 GCCTTCAACAGCAGCGAAAGCGACAAGGCGGTTGGCGAAGGTAGAGTTCTTGTCCGAGAT 105627 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||||| || |||||||| |||||| || Sbjct 105628 CCATCGCAGGGCCCAATCAGCCTTCTTGCGGATGCAGGG 105666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528247133440