Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq332 284 2e-71 seq289 165 2e-35 >seq332 Length=679357 Score = 284 bits (314), Expect = 2e-71 Identities = 723/1079 (67%), Gaps = 47/1079 (4%) Strand=Plus/Plus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 ||||||| ||||| |||||||| || |||||||| |||||| ||||||| ||| Sbjct 209090 CGCAAGAAGAGGTCAGAGCAGCGTGATAAATGGTCTCGAAGATCTGGATGTTGAGCTTCT 209149 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTG 221523 | ||||| || || ||| |||| || || | | ||||| |||| || || || || Sbjct 209150 TAGCCTCAGGTGACTCGAAAGGCAAGCGAAG-AGCGAGGAAAG-CGTCAGCAAGACCTTG 209207 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGAT 221582 || || | ||| || |||||||| | |||| ||||| || || ||||||| Sbjct 209208 GACACCAAGACCAATAGGCCTGTGACGGAAGTTGCT-GCGGCGTGCCTCCTCAACGGGAT 209266 Query 221583 AAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA 221642 | ||| || ||||| | ||||| || || ||||| ||| | || |||||| | Sbjct 209267 AGTGGTTAACCTCGATGATCTTGTTAAGATTGCGAGTGCAGACCTGCACGACCTCGTGAA 209326 Query 221643 GCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTA 221702 |||||| |||| | ||||| || | | || | || || || | | | Sbjct 209327 GCTTCT------TGAAATCGAACTCTCCACGCTTGTAG------TCGACGAAGGAGGGCA 209374 Query 221703 GGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCT 221762 | |||||| ||| ||||| || || || ||||| || ||| |||| ||||||| Sbjct 209375 GAGCAACGGAGGCAAGGTTGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCT 209434 Query 221763 CTGTACAGAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGAT 221819 | || || | || ||||| ||||| || |||| || || || ||| | | Sbjct 209435 CAGTGCACAAATTCGAGCTGCGA---ATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGT 209491 Query 221820 TGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCT 221879 ||||||| |||||||||||||| ||||| |||||||| ||||||| | ||||| Sbjct 209492 TGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGG 209551 Query 221880 TGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATA 221937 || |||||| | |||| || | || ||| || ||| | |||||| ||| || || Sbjct 209552 CGTACCAGAGCT-TCTGAGCACGGACAGTC-TCGCGACCACGACCCTC---CTTCTCGTA 209606 Query 221938 C--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG 221995 | | ||| || ||| | |||| || ||||| | || | ||||| || ||| | Sbjct 209607 CTTCTCGTAAAGGGCAA--CGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCG 209664 Query 221996 GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGG 222055 ||||||||| || |||| | ||| |||| || | |||||||||||| || || Sbjct 209665 TTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGA 209724 Query 222056 ATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTC 222115 ||||||| || | |||||||| | | || ||||||| ||||| ||| |||||| Sbjct 209725 ATCCACAAAGCATAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTC 209784 Query 222116 AGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCG 222175 || || | || |||| | |||||||||||||||||| || |||| ||| | ||| || Sbjct 209785 AGGTCGAGGAAGCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCA 209844 Query 222176 GGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGT 222234 || ||||||||||||||||| || | ||| | | | |||| ||| || || | Sbjct 209845 GGGCGCTTGTTGCCACCCTGGTCGA-CATAACGGGCGGTGTTGTTGTAGACACGGAGCAT 209903 Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294 || | || ||||| ||| |||||||| || |||||||| ||| ||| | | Sbjct 209904 AGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAAT 209963 Query 222295 GTTACTGGCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCT 222350 | || ||| | ||| ||||| || || || ||||||| |||||| ||| Sbjct 209964 G----CGGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCT 210019 Query 222351 TGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACG 222410 | || ||||| ||| ||||| || ||||||||| | || | || || || || | Sbjct 210020 TCAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATG 210079 Query 222411 ACATCTG-AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||||||| | |||| | | ||| || || || || || |||||||| ||||| Sbjct 210080 ACATCTGTGGGGATGGT-GTGCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTA 210137 >seq289 Length=227737 Score = 165 bits (182), Expect = 2e-35 Identities = 348/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| |||||| || |||||| | ||| | |||| Sbjct 105666 CCCTGCATCCGCAAGAAGGCTGATTGGGCCCTGCGATGGATCTCGGACAAGAACTCTACC 105607 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | | | || || || || || |||||||| || |||||||| |||||||||||||| Sbjct 105606 TTCGCCAACCGCCTTGTCGCTTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGTTCGTTC 105547 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||||||||| ||| || || |||||||| || || ||||||||| Sbjct 105546 GCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTCACATTCTCCAACGAG 105487 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | |||||||| | |||| || ||||| ||||| |||| | | Sbjct 105486 CTCATCTCTCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTTCTCTTCTC------T 105433 Query 26050 TTGCTCCACAA--ACCTTCTCAA-GAGACCGTCTACAG-TATCATCAAAGAGGCTGTGGA 26105 ||||| |||| || ||| ||| ||||| ||| ||||||| ||||| || Sbjct 105432 TTGCTGAACAACCGCCCAAGCAAGGAGGCCGTC-GCAGCCATCATCACCGAGGCCGTTAC 105374 Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165 |||||| ||||||| | ||||||||| | | Sbjct 105373 AATCGAGCAGGAGTTCTTGTCCGATGCCCTGCCTTGTGCCCTGCTCGGCATGAACGCCGG 105314 Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG-TGCCAGCTGGGACTCG 26224 |||||| |||| |||||||||| || ||||||| |||||| || | || || | Sbjct 105313 TCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGCCTGCTGCTGGC-CCTCGGCAACC 105255 Query 26225 CCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 ||| | ||||| |||| | ||||| |||||||| ||||| ||||| || | | || Sbjct 105254 CCAAGCACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGCTGG 105197 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||||| || ||| | || || ||||| || Sbjct 105196 CAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTACCA 105158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840260271040