Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq297 131 5e-25 seq332 120 9e-22 seq327 89.7 2e-12 >seq297 Length=250371 Score = 131 bits (144), Expect = 5e-25 Identities = 211/301 (70%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| |||||| | ||| | | |||||||||||| ||||||||| | || || Sbjct 75313 CATAACGTCTTCGAGCGCCTTAACGAGACGACGCTGAATGTAACCAGTTTCGGCAGTCTT 75372 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| |||||||| |||| || |||||||| | ||| || Sbjct 75373 GACGGCAGTATCAATCAGACCTTCACGACCAGCCATGGCGTGGAAGAAAAACTCCGAAGG 75432 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| || || | | | ||| |||| |||||||| || | || ||||||| |||| Sbjct 75433 -CGTGAGACCACGCAGGTAAGAGTTCTCCACGAAACCTCGGGATTCTGGCGAATAGTCGT 75491 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||| || ||||| ||||||||||||| || | || | || ||||| | || || | Sbjct 75492 CCTTAGTGAAGTGAGGCAGGGTCCTGTACTTGAATCCAAAGGGAATACGTTGACCTTCGA 75551 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 || ||||| || | | || | ||||||||| || || | | | |||||||| | Sbjct 75552 CGGCTTGCTGACCGACGAGAGACACCATCTGCGAGATGTTGACAGTAGAACCCTTGGAAC 75611 Query 302864 C 302864 | Sbjct 75612 C 75612 Score = 120 bits (132), Expect = 9e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| |||||||| |||||||| || |||||||| | | Sbjct 210447 GCACCGTGGGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAGTCCACCATCTCTA 210506 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| ||||||| || |||||| | | ||||| | ||| || Sbjct 210507 GCACGACCCTCAACAGGCTGGCGCGTGAGAATCTGTAGCGGACCACGCGCACGGGCGTGA 210566 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| || | ||||||||| | |||||||||||| | | |||||| | |||||| Sbjct 210567 ATCTTGTCGTCGACCATATGCCTCAGACGCTGGTAGTACGTGGGACCCAAGAAGAT 210622 >seq332 Length=679357 Score = 120 bits (132), Expect = 9e-22 Identities = 381/590 (65%), Gaps = 3/590 (1%) Strand=Plus/Plus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| ||| || | ||| ||| | ||||||||| || || | || | Sbjct 209701 ACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGCGAGCACGAACC 209760 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | |||||| ||||||| || || | ||| | | |||| || ||| Sbjct 209761 TCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGCGTGCCACGGC 209820 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || || || || |||||| |||| | |||| |||||||| || ||||| || || Sbjct 209821 TCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCG 209880 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || ||| |||||| ||||||||||| | ||| || || || || |||||||| | | Sbjct 209881 GTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGTTGGTTCCTCCA 209940 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 || | ||| || | | |||| || | | || |||||||| || | || Sbjct 209941 ATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTG 210000 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 || || ||||| ||| | || | | | ||||| ||||| || || | ||| Sbjct 210001 GAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATG 210060 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | || |||| || | || || |||||| || || ||||| ||||| || Sbjct 210061 TCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCCGGCATTGAAGAGTGTCGGC 210120 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGA 156386 | || || | || ||||| | ||||| || ||||||||||| | |||||||| Sbjct 210121 GACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCAATG 210180 Query 156387 TTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATC 156446 | | ||| || | | || ||| | ||| ||| ||||| || ||||| ||| | Sbjct 210181 TCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGCTGCGGGCGCTCGGCAACC 210240 Query 156447 ACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAA 156496 |||| || || || || |||| ||| ||||| || || || ||||| Sbjct 210241 TTGCCATTGATGCGGAGCAGATATGAGCGCTCCAGGGTCTTGAAGCCGAA 210290 >seq327 Length=659190 Score = 89.7 bits (98), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 |||||| |||| || ||||||||||| | ||| ||||| || |||||||||| |||| Sbjct 292811 GCGAGACCACCGAGAGAGTCACGGTCCAAGAAGTTAGTCGGCTCGTCAAGGACGAGAAGA 292752 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || |||| || || ||||| |||||||| || || || || Sbjct 292751 TGGGGGTTGTTCCACATAGCACCAGCAAGCACAACCTTGACCTTCTGACCACCAGAAAG 292693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810226653767