Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq289 161 1e-33 seq332 149 8e-30 seq270 149 8e-30 seq315 96.9 4e-14 seq323 89.7 6e-12 seq290 89.7 6e-12 seq279 89.7 6e-12 >seq289 Length=227737 Score = 161 bits (178), Expect = 1e-33 Identities = 227/315 (72%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| |||||||||||||| | || ||||| Sbjct 105152 GCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGAGAGATG 105211 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||||||| | ||||| | | Sbjct 105212 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTGGGGTTGCCGAGGGCCAGC 105271 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct 105272 AGCAGGCGGTCGGCGACGAACTCAATGTACTGGCACATGAGACCGGCGTTCATGCCGAGC 105331 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | ||| || ||||| | |||||| ||||||||| |||| Sbjct 105332 AGGGCACAAGGCAGGGCATCGGACAAGAACTCCTGCTCGATTGTAACGGCCTCGGTGATG 105391 Query 868931 AT--CTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 || |||| ||| | | | |||| |||| |||| | | |||| ||||| | Sbjct 105392 ATGGCTGCGACGGC-CTCCTTGCTTGGGC-GGTTGTTCAGCAAAGAGAAGAGAAGGCAAG 105449 Query 868989 CAAAGTCGCAGTGCA 869003 |||||||| ||||| Sbjct 105450 CAAAGTCGGTGTGCA 105464 Score = 105 bits (116), Expect = 8e-17 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| |||||| || |||||||||||||| ||| | |||| | | || || Sbjct 105801 GTGGACGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGTGCCTCGGGGATCTGTAC 105860 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| ||| || || | ||||||||| || ||||||||| ||| ||||| || Sbjct 105861 CTCGCCAGAGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCGAAGAA 105920 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGTGG 869809 ||| |||||||| ||| ||| |||||||| ||| |||| || | ||||| | Sbjct 105921 AGCGAGGACGTGGGAGATGAAGAAACGCTCGTCATCGTTGAG--ACGCTTGTTCCAGTCG 105978 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | ||| || | |||||| |||||||||| || ||||||||||| ||| Sbjct 105979 TGAAGGTCCTTGGAGAGATCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTG 106038 Query 869870 TACATCTCCCATACTTG 869886 ||||| | ||| || || Sbjct 106039 TACATTTGCCAGACCTG 106055 >seq332 Length=679357 Score = 149 bits (164), Expect = 8e-30 Identities = 213/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || || |||| ||| |||| |||||||| || | | ||||| || Sbjct 209862 CTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGA 209921 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || | | ||| | ||||| ||| || | ||| || | ||| Sbjct 209922 TGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGAGGCC 209981 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | |||||| || |||||||||||||| ||||| Sbjct 209982 AATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTC 210041 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| | ||| ||||| || || | || ||| | ||||| Sbjct 210042 AATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCC 210101 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| |||||||| || |||| ||| ||||| ||| | |||||||| |||||| || Sbjct 210102 GGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGT 210161 Score = 105 bits (116), Expect = 8e-17 Identities = 323/501 (64%), Gaps = 18/501 (4%) Strand=Plus/Plus Query 1628109 GGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGAC 1628168 |||||| || ||| || ||||||||| || || || |||| | ||| || Sbjct 209370 GGGCAGAGCAACGGAGGCAAGGTTGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGAT 209429 Query 1628169 GATCTCGGTGCACAGGTTGGCCGACGT-CG--TCGTACCCAGGTTCTGCTGGTTGGTGGT 1628225 |||||| ||||||| || ||| | || | ||||| ||||||| ||||||| | | Sbjct 209430 GATCTCAGTGCACAAATT---CGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTT 209486 Query 1628226 CAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGAC 1628285 | |||| | || ||||||| ||||||| |||| || ||||| |||| ||| | | Sbjct 209487 CCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAG 209546 Query 1628286 GATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTC-CGCG--CGCGGCCCTNNNNNNN 1628342 ||||| |||||| || | || | ||||||| |||| | || |||| Sbjct 209547 AATGGCGTACCAGAGCTTCTGAGCACG---GACAGTCTCGCGACCACGACCCTCCTTCTC 209603 Query 1628343 NNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTC 1628402 | || | |||||||| || ||||| || ||| Sbjct 209604 GTACTTCTCGTAAAGGGCAACGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTC 209663 Query 1628403 GGACGGACAAAAGAGCGACCAGTCGCCACCGGTCAC---CGCGCGGCGCATAAAGAGGTC 1628459 | ||||| | || | ||| ||||| | || | | | || |||| ||||| || Sbjct 209664 GTTGGGACACATAAGGGTCCACTCGCC---GTTCTCTTGCACACGCTGCATGAAGAGATC 209720 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||||| || || ||||| ||||| || || ||||||||||||||||||||| Sbjct 209721 GGGAATCCACAAAGCATAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTT 209780 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 | |||||||| || | | | ||| |||||||||||||| |||||| |||||| || Sbjct 209781 CCTCAGGTCGAGGAAGCCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGC 209840 Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600 || ||||||| ||| || Sbjct 209841 ACCAGGGCGCTTGTTGCCACC 209861 >seq270 Length=184239 Score = 149 bits (164), Expect = 8e-30 Identities = 137/171 (80%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | ||||| ||| | || || ||| | |||||||| | Sbjct 154402 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTGTTCGAGATCATCCTCGCTG 154460 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||| | || || || | || |||||| | || |||||||||| Sbjct 154461 CCAACTACCTCGACATCAAGGCCCTCCTTGACGTCGGCTGCAAGACCGTCGCCAACATGA 154520 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||||||||| || |||||| || ||| Sbjct 154521 TCAAGGGCAAGTCTCCCGATGAGATCCGCAAGACGTTCAACATCCAGAACG 154571 >seq315 Length=328129 Score = 96.9 bits (106), Expect = 4e-14 Identities = 197/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 || ||||| || || ||||| || || ||||||||||| | || || || || || | Sbjct 267912 GAAGCCGTTCTTGAGCTCAATGCCTCTGACGAGCGCGGTATTGATGTGGTCCGTAACAGG 267971 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087 |||||| | ||| |||| || |||||||| || ||||| ||| | ||||| Sbjct 267972 ATCAAGGGCTTCGCACAGAAGAAAGTCACTCTGCCGCCTGGCCGCCAGAAGCTCGTCATC 268031 Query 1574088 CTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAA 1574147 || ||||| || ||| || | ||||| | || ||||| ||||| || ||| |||||| Sbjct 268032 CTTGACGAAGCAGACAGCATGACGTCCGGCGCTCAGCAAGCCCTCCGCCGCACAATGGAA 268091 Query 1574148 AAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAG 1574207 | ||| | || ||||| || || | || ||||| ||| | | |||||||| Sbjct 268092 ATTTACAGCGCAACCACGCGATTCGCATTCGCCTGCAATCAGTCCAACAAGATCATCGAG 268151 Query 1574208 GCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCA 1574260 | || || || ||||| || ||| | | | ||||| |||||||| Sbjct 268152 CCTCTGCAGTCCCGTTGCGCTATCCTGAGATACGCCCGCCTTACAGACGCCCA 268204 >seq323 Length=472356 Score = 89.7 bits (98), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 19043 AGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGG 19102 |||||||||||| || ||||| ||||| || || |||||| || | || | || Sbjct 32616 AGAGGACAGCATTGGTGGCACAGTGACATGTGTCATTCGCAATTGTCCTACTGGATTGGG 32675 Query 19103 CGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGC 19162 ||||| ||||| || || | ||||| |||||| || |||||||| || ||||| || Sbjct 32676 AGAGCCCTGCTTCGATAAACTTGAGGCAAAGCTCGCACATGCCATGCTTTCTATCCCAGC 32735 Query 19163 CACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 || ||||| |||||||| || | | ||||| Sbjct 32736 AACTAAGGGTTTCGAGATCGG-ATCTGGTTT 32765 >seq290 Length=228044 Score = 89.7 bits (98), Expect = 6e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 |||||||||||| |||| | ||| ||| |||||| || || || | || Sbjct 221306 GGTCTGGATCTCACGCGAGGAGATGGTGGACTTCTTGTTGTAGGCAGCGAGCTTGGAAGC 221247 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||| ||| ||| ||| |||| ||||||||||| || ||||||| || ||||| | Sbjct 221246 CTCAGTGGCGACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCAGGATGGACATGGCGCG 221187 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 221186 GTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGAC 221148 >seq279 Length=194733 Score = 89.7 bits (98), Expect = 6e-12 Identities = 148/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 1852046 ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGC 1852105 ||||||||| ||| || ||| |||||||| |||| || | || || || || | | Sbjct 27400 ATCTTGGAGTCGGGGTCTGAGGCACTCATCTTACCGC-CTTGCAGA--CCAGGTACCATC 27456 Query 1852106 GGGTTGA-GCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAA 1852164 ||||| | |||| || ||||| | ||||||| || ||| || || | Sbjct 27457 GGGTTCATGCAG-TGTGCGCGCTCCTTGTAGCCGATCTTGGGGAGGATATCCTTTGCGAG 27515 Query 1852165 GGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTC 1852224 ||||| ||||||||||| ||| ||||||||||| || || || |||| |||||| Sbjct 27516 AGCAAAAATCTTGCGCTGATCGACACCGCCAAACTGCATATCAACATCAAGGTACTGCTC 27575 Query 1852225 GTCGAGGGCCTGCATGAGCGGGTAGAGCA 1852253 ||| ||||| ||||| ||||| ||||||| Sbjct 27576 GTCAAGGGCTTGCATAAGCGGATAGAGCA 27604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107107112708947