Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq332 179 3e-40 seq308 91.5 1e-13 >seq332 Length=679357 Score = 179 bits (198), Expect = 3e-40 Identities = 972/1535 (63%), Gaps = 64/1535 (4%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| || || || || | || ||||| || ||||| |||| |||| Sbjct 208809 GTTGACGACCTGGAACTCTCCAGCAAGCACACGACGGGAATAGATGTTCGAGGTGTAAGG 208868 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | |||||||| || |||||||| | || | || || |||||| ||| | Sbjct 208869 CTCGAAGCACTCGTTGTTACCAAGAATCTGGGAGGTAGAGGCAGTGGGCATGGGCGCAAT 208928 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 | ||||| || || | |||||| | ||| ||||| ||||| | ||||||||| Sbjct 208929 GAGCAGAGAGTTGCGGACACCGTGCTGGGCGATCTTGTCCTTCAGCGAGGCCCAGTCCCA 208988 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGG 138736 | ||| | || | | |||||| |||||||| | | ||| |||| ||| Sbjct 208989 GAGATCAGTGGGGGTGACGCCCCACATGTCGTACTGCAGCTGGCCCTGCGAAACAGGCGA 209048 Query 138737 GACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGA 138796 | |||||||||| | |||| ||||| ||| | || |||| | | Sbjct 209049 G----CCTTCGTACGTAGCGTAAGGACCAAGCTCCTTGGCAGTCTCGCAAGAAGAGGTCA 209104 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCT 138856 | ||| | | ||||| || ||| ||||| |||||| ||||| | || Sbjct 209105 GAGCAGCGTGATAAATGGTCTCGAAGATCTGGATGTTGAGCTTCTTAGCCTCAGGTGACT 209164 Query 138857 CGTACGGCATGCGGAGCATCGTG-AACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACA 138915 || | |||| ||| || | || | || ||||| || || ||||| || || | || | | Sbjct 209165 CGAAAGGCAAGCGAAG-AGCGAGGAAAGCGTCAGCAAGACCTTGGACACCAAGACCAATA 209223 Query 138916 GGGCGATGGCGCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGTTTACATCGAT 138974 || | || || | | ||| || ||| | || | ||||| | ||| || ||||| Sbjct 209224 GGCCTGTGACGGA-AGTTGCTGCGGCGTGCCTCCTCAACGGGATAGTGGTTAACCTCGAT 209282 Query 138975 GATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGT 139033 ||| ||||| | ||| || | |||| || | | || | | | |||||| Sbjct 209283 GATCTTGTTAAGATTGCGAGTGCAGACCTGCA-CGACCTCGTGAAGCTTCTTGAAATCGA 209341 Query 139034 ATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGT 139093 | || | |||| |||||||| | || | | | || ||||| | || Sbjct 209342 ACTCTCCACGCTTGTAGTCGACGAAG--GA-------GGGCAGAGCAACGGAGGCAAGGT 209392 Query 139094 TGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTAC 139153 |||| || || || || || || || |||| |||| || || | |||||||| | Sbjct 209393 TGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAAATTCGAGC 209452 Query 139154 ACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCA 139213 || ||||| | || | || ||||| || | ||| |||||| ||||| |||| Sbjct 209453 TGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCA 209512 Query 139214 TATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTT 139273 | | || | ||||| || || | ||| | |||| | || || ||||| Sbjct 209513 TGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGT---ACCAG-----AGCTT 209564 Query 139274 GTATTTGACGCACGTAAAGT-TCGT---CGCG---------CTCGTACTTTTCGTAGAGT 139320 | || ||||| | ||| ||| | || ||||||||| ||||| || Sbjct 209565 CT----GA-GCACGGACAGTCTCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGG 209619 Query 139321 TCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAG 139379 | |||| |||| | |||||| |||||| || | | |||| || |||||||| || Sbjct 209620 GCAACGAACTCGT-CGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAG 209678 Query 139380 CGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAA 139439 | ||| |||||||| | | || ||| |||||| ||||| |||||||||||||| | Sbjct 209679 GGTCCACTCGCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATA 209738 Query 139440 CAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATC 139499 | | |||||| || || ||| || ||| ||| || ||||| | Sbjct 209739 GAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCC 209798 Query 139500 AAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCC 139556 ||| |||||||||||||| || || || |||||||| | || || || ||||| Sbjct 209799 AAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCC 209858 Query 139557 ACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCT 139616 ||| || ||||| | || | | || ||| | || || | ||| || || |||| | Sbjct 209859 ACCCTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTT 209918 Query 139617 CGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTCATGTACATT 139673 | |||||||||||| | | ||| | | | || || || | | || || || Sbjct 209919 TGATGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTG---GCACGAATGCGGTGGACGTT 209975 Query 139674 GATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATAT 139733 || ||| || ||||| || ||||| || || |||| | || ||||| || Sbjct 209976 GAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGAT 210035 Query 139734 ACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTT 139793 ||| |||||||| |||| ||| || || ||||| || || | || || | Sbjct 210036 ACCCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGG 210095 Query 139794 CGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTC 139853 |||||||| || || || || |||||| ||||| | | |||||| | || Sbjct 210096 TGTGCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTC 210155 Query 139854 GTACGTTTCGATGGCGCTCACAATATCCCTTCC--GTGGATACCGACAGAGACTCGCATC 139911 ||| || |||||||| || |||| ||| ||| |||||| || |||| ||| ||||| Sbjct 210156 GTATGTCTCGATGGCCTTCTCAATGTCC--TCCATGTGGATGCCAACAGCGACACGCATG 210213 Query 139912 AGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCT 139971 ||||| || || || ||||| ||| ||| | ||| |||||| | ||| Sbjct 210214 AGCATGTGCTGCGGGCGCTCGGCAACCTTGCCATTGATGCGGAGCAGATATGAGCGCTCC 210273 Query 139972 AGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||||||| |||| ||| || |||||||| || Sbjct 210274 AGGGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTC 210308 >seq308 Length=314950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || ||||| || || || || |||||||||||||| || Sbjct 276265 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAG 276206 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | |||| || || ||||| || ||||| ||||| || ||| Sbjct 276205 CAGCTCGAGGATGGTCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 276146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895401125480