Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17]
391 sequences; 33,420,179 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq289 152 8e-31
seq270 149 1e-29
seq332 140 5e-27
seq315 140 5e-27
seq279 102 1e-15
seq290 87.8 3e-11
>seq289
Length=227737
Score = 152 bits (168), Expect = 8e-31
Identities = 186/252 (74%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || || |||||| |||||| |||||||||||||| | |
Sbjct 105144 TGACACCAGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAA 105203
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | ||||||||| | ||||
Sbjct 105204 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTGGGGTTGCCGA 105263
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 105264 GGGCCAGCAGCAGGCGGTCGGCGACGAACTCAATGTACTGGCACATGAGACCGGCGTTCA 105323
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGGC 794128
|||||| || || ||||| | ||| |||| ||||| | |||||| |||||
Sbjct 105324 TGCCGAGCAGGGCACAAGGCAGGGCATCG--GACAAGAACTCCTGCTCGATTGTAACGGC 105381
Query 794129 CTCGATGATGAT 794140
|||| |||||||
Sbjct 105382 CTCGGTGATGAT 105393
Score = 104 bits (114), Expect = 4e-16
Identities = 147/206 (71%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||||| | || ||||| |||||| || | |||||||| || ||||||
Sbjct 105844 GCCTCGGGGATCTGTACCTCGCCAGAGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCG 105903
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267
||| ||| ||||| || ||||||||||| ||| ||| ||||||||| ||| |||
Sbjct 105904 TCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAACGCTCGTCATCGTTGAGA 105963
Query 796268 -GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
|| | ||||| | ||| | ||| |||| |||||| |||||||| || ||
Sbjct 105964 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCTGCGGTCCAGAAAGAA 106023
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352
||||||||||| |||||||| | |||
Sbjct 106024 GCCTCGGCCTTCTTGTACATTTGCCA 106049
>seq270
Length=184239
Score = 149 bits (164), Expect = 1e-29
Identities = 123/150 (82%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | || || ||| | |||||||| |||||||||||||||||||||
Sbjct 154422 AGGTCGACCAGGAGATGCTGTTCGAGATCATCCTCGCTGCCAACTACCTCGACATCAAGG 154481
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
||||||| || | || ||||||||||| |||||| | |||||||||||||| ||||| |
Sbjct 154482 CCCTCCTTGACGTCGGCTGCAAGACCGTCGCCAACATGATCAAGGGCAAGTCTCCCGATG 154541
Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||||||||| || |||||| || |||
Sbjct 154542 AGATCCGCAAGACGTTCAACATCCAGAACG 154571
>seq332
Length=679357
Score = 140 bits (154), Expect = 5e-27
Identities = 211/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||||||||| || || |||| ||| |||| |||||||| || | | ||||| ||
Sbjct 209862 CTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGA 209921
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || | | ||| | ||| | ||| || | ||| || | |||
Sbjct 209922 TGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGAGGCC 209981
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| ||||| || | ||||||||| | |||||| | |||||||| |||||||| |||||
Sbjct 209982 AATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTC 210041
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| ||| |||||||||| | || ||||| || || | || ||| | |||||
Sbjct 210042 AATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCC 210101
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|||||||||||| || |||| ||| ||| | ||| || |||||| ||||| ||
Sbjct 210102 GGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGT 210161
Score = 113 bits (124), Expect = 7e-19
Identities = 271/412 (66%), Gaps = 18/412 (4%)
Strand=Plus/Plus
Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669
|||| || ||||||| ||||||||| || |||| | || ||||||| |||||| |||
Sbjct 209459 TGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGG 209518
Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCAC 2071727
| ||| ||||| |||| ||| | ||||| |||| | || | || ||| ||
Sbjct 209519 GGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGGACA- 209577
Query 2071728 CGAGGTCCTCGCG----CGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGG 2071783
||| ||||| || |||| | ||||| | || ||
Sbjct 209578 ----GTC-TCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGT 209632
Query 2071784 CGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC 2071843
|||||| | || ||||| || |||| || || | || | ||| ||||||
Sbjct 209633 CGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGT 209692
Query 2071844 CAGTCAC---CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGC 2071900
|| | ||| || |||| || || ||| |||||| | || ||||||||||
Sbjct 209693 ---TCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGC 209749
Query 2071901 GCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGG 2071960
| || || ||||||||||||||||||||| |||||||||| || | | || ||| |
Sbjct 209750 GAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAG 209809
Query 2071961 CGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||||||||||| |||||| |||||| || || ||||||| ||| ||
Sbjct 209810 CGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 209861
>seq315
Length=328129
Score = 140 bits (154), Expect = 5e-27
Identities = 241/350 (69%), Gaps = 0/350 (0%)
Strand=Plus/Plus
Query 2019048 GGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAG 2019107
||||| || || |||| ||||| || ||| ||| | |||| ||| | | ||
Sbjct 267855 GGCAAAACGACATCCATCCTCTGCCTCGCCCGCCAGCTGCTTGGCGACGCCTACAAGGAA 267914
Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167
||||| || || |||||||| || ||||||||||| | || || || |||| | |||
Sbjct 267915 GCCGTTCTTGAGCTCAATGCCTCTGACGAGCGCGGTATTGATGTGGTCCGTAACAGGATC 267974
Query 2019168 AAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTC 2019227
||| ||| ||| | | || |||||||| |||||||| ||| | |||||||
Sbjct 267975 AAGGGCTTCGCACAGAAGAAAGTCACTCTGCCGCCTGGCCGCCAGAAGCTCGTCATCCTT 268034
Query 2019228 GATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAG 2019287
|| || || ||| || | ||||| | || ||||| |||||||| || |||||||
Sbjct 268035 GACGAAGCAGACAGCATGACGTCCGGCGCTCAGCAAGCCCTCCGCCGCACAATGGAAATT 268094
Query 2019288 TACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCC 2019347
|||| | || ||||| || || | |||||||| ||| | | ||||||| |
Sbjct 268095 TACAGCGCAACCACGCGATTCGCATTCGCCTGCAATCAGTCCAACAAGATCATCGAGCCT 268154
Query 2019348 CTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCA 2019397
|| ||| ||||||||| ||| || | | || ||||| || ||||||||
Sbjct 268155 CTGCAGTCCCGTTGCGCTATCCTGAGATACGCCCGCCTTACAGACGCCCA 268204
>seq279
Length=194733
Score = 102 bits (112), Expect = 1e-15
Identities = 159/222 (72%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 2411376 ATCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGT 2411432
|| ||||||| |||||||||||| ||| || ||| |||||||| ||| |||||
Sbjct 27384 ATTGTCGAGAACATCAATCTTGGAGTCGGGGTCTGAGGCACTCATCTTACCG-CCTTGCA 27442
Query 2411433 GAGGCCCGGCACCAGCGGGTTGA-GCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCA 2411491
|| || || |||| |||||| | |||| || ||||| |||||| | | || |
Sbjct 27443 GA--CCAGGTACCATCGGGTTCATGCAG-TGTGCGCGCTCCTTGTAGCCGATCTTGGGGA 27499
Query 2411492 GGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGA 2411551
|| || || | ||||| ||||||||||| ||| ||||||||||| || |
Sbjct 27500 GGATATCCTTTGCGAGAGCAAAAATCTTGCGCTGATCGACACCGCCAAACTGCATATCAA 27559
Query 2411552 CGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2411593
| || |||| ||||||||| ||||| ||||| ||||| ||||
Sbjct 27560 CATCAAGGTACTGCTCGTCAAGGGCTTGCATAAGCGGATAGA 27601
>seq290
Length=228044
Score = 87.8 bits (96), Expect = 3e-11
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663
||||| ||| ||| ||| |||| ||||||||||| || ||||||| ||| ||||| |
Sbjct 221248 GCCTCAGTGGCGACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCAGGATGGACATGGCG 221189
Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||| || ||||||||| ||||||||||| ||
Sbjct 221188 CGGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGAC 221148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916204807546649
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |