Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq289 152 8e-31 seq270 149 1e-29 seq332 140 5e-27 seq315 140 5e-27 seq279 102 1e-15 seq290 87.8 3e-11 >seq289 Length=227737 Score = 152 bits (168), Expect = 8e-31 Identities = 186/252 (74%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||||||||| | | Sbjct 105144 TGACACCAGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCAA 105203 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | ||||||||| | |||| Sbjct 105204 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTGGGGTTGCCGA 105263 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 105264 GGGCCAGCAGCAGGCGGTCGGCGACGAACTCAATGTACTGGCACATGAGACCGGCGTTCA 105323 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGGC 794128 |||||| || || ||||| | ||| |||| ||||| | |||||| ||||| Sbjct 105324 TGCCGAGCAGGGCACAAGGCAGGGCATCG--GACAAGAACTCCTGCTCGATTGTAACGGC 105381 Query 794129 CTCGATGATGAT 794140 |||| ||||||| Sbjct 105382 CTCGGTGATGAT 105393 Score = 104 bits (114), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | || ||||| |||||| || | |||||||| || |||||| Sbjct 105844 GCCTCGGGGATCTGTACCTCGCCAGAGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCG 105903 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267 ||| ||| ||||| || ||||||||||| ||| ||| ||||||||| ||| ||| Sbjct 105904 TCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAACGCTCGTCATCGTTGAGA 105963 Query 796268 -GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | ||| | ||| |||| |||||| |||||||| || || Sbjct 105964 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCTGCGGTCCAGAAAGAA 106023 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||||||||| |||||||| | ||| Sbjct 106024 GCCTCGGCCTTCTTGTACATTTGCCA 106049 >seq270 Length=184239 Score = 149 bits (164), Expect = 1e-29 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | || || ||| | |||||||| ||||||||||||||||||||| Sbjct 154422 AGGTCGACCAGGAGATGCTGTTCGAGATCATCCTCGCTGCCAACTACCTCGACATCAAGG 154481 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 ||||||| || | || ||||||||||| |||||| | |||||||||||||| ||||| | Sbjct 154482 CCCTCCTTGACGTCGGCTGCAAGACCGTCGCCAACATGATCAAGGGCAAGTCTCCCGATG 154541 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||||||||| || |||||| || ||| Sbjct 154542 AGATCCGCAAGACGTTCAACATCCAGAACG 154571 >seq332 Length=679357 Score = 140 bits (154), Expect = 5e-27 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| |||| |||||||| || | | ||||| || Sbjct 209862 CTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGA 209921 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || | | ||| | ||| | ||| || | ||| || | ||| Sbjct 209922 TGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTGAGGCC 209981 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | |||||| | |||||||| |||||||| ||||| Sbjct 209982 AATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTC 210041 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || | || ||| | ||||| Sbjct 210042 AATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCC 210101 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 |||||||||||| || |||| ||| ||| | ||| || |||||| ||||| || Sbjct 210102 GGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGT 210161 Score = 113 bits (124), Expect = 7e-19 Identities = 271/412 (66%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 |||| || ||||||| ||||||||| || |||| | || ||||||| |||||| ||| Sbjct 209459 TGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGG 209518 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCAC 2071727 | ||| ||||| |||| ||| | ||||| |||| | || | || ||| || Sbjct 209519 GGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGGACA- 209577 Query 2071728 CGAGGTCCTCGCG----CGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGG 2071783 ||| ||||| || |||| | ||||| | || || Sbjct 209578 ----GTC-TCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGT 209632 Query 2071784 CGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC 2071843 |||||| | || ||||| || |||| || || | || | ||| |||||| Sbjct 209633 CGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGT 209692 Query 2071844 CAGTCAC---CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGC 2071900 || | ||| || |||| || || ||| |||||| | || |||||||||| Sbjct 209693 ---TCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGC 209749 Query 2071901 GCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGG 2071960 | || || ||||||||||||||||||||| |||||||||| || | | || ||| | Sbjct 209750 GAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAG 209809 Query 2071961 CGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||||||| |||||| |||||| || || ||||||| ||| || Sbjct 209810 CGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 209861 >seq315 Length=328129 Score = 140 bits (154), Expect = 5e-27 Identities = 241/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 2019048 GGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAG 2019107 ||||| || || |||| ||||| || ||| ||| | |||| ||| | | || Sbjct 267855 GGCAAAACGACATCCATCCTCTGCCTCGCCCGCCAGCTGCTTGGCGACGCCTACAAGGAA 267914 Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167 ||||| || || |||||||| || ||||||||||| | || || || |||| | ||| Sbjct 267915 GCCGTTCTTGAGCTCAATGCCTCTGACGAGCGCGGTATTGATGTGGTCCGTAACAGGATC 267974 Query 2019168 AAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTC 2019227 ||| ||| ||| | | || |||||||| |||||||| ||| | ||||||| Sbjct 267975 AAGGGCTTCGCACAGAAGAAAGTCACTCTGCCGCCTGGCCGCCAGAAGCTCGTCATCCTT 268034 Query 2019228 GATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAG 2019287 || || || ||| || | ||||| | || ||||| |||||||| || ||||||| Sbjct 268035 GACGAAGCAGACAGCATGACGTCCGGCGCTCAGCAAGCCCTCCGCCGCACAATGGAAATT 268094 Query 2019288 TACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCC 2019347 |||| | || ||||| || || | |||||||| ||| | | ||||||| | Sbjct 268095 TACAGCGCAACCACGCGATTCGCATTCGCCTGCAATCAGTCCAACAAGATCATCGAGCCT 268154 Query 2019348 CTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCA 2019397 || ||| ||||||||| ||| || | | || ||||| || |||||||| Sbjct 268155 CTGCAGTCCCGTTGCGCTATCCTGAGATACGCCCGCCTTACAGACGCCCA 268204 >seq279 Length=194733 Score = 102 bits (112), Expect = 1e-15 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 2411376 ATCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGT 2411432 || ||||||| |||||||||||| ||| || ||| |||||||| ||| ||||| Sbjct 27384 ATTGTCGAGAACATCAATCTTGGAGTCGGGGTCTGAGGCACTCATCTTACCG-CCTTGCA 27442 Query 2411433 GAGGCCCGGCACCAGCGGGTTGA-GCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCA 2411491 || || || |||| |||||| | |||| || ||||| |||||| | | || | Sbjct 27443 GA--CCAGGTACCATCGGGTTCATGCAG-TGTGCGCGCTCCTTGTAGCCGATCTTGGGGA 27499 Query 2411492 GGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGA 2411551 || || || | ||||| ||||||||||| ||| ||||||||||| || | Sbjct 27500 GGATATCCTTTGCGAGAGCAAAAATCTTGCGCTGATCGACACCGCCAAACTGCATATCAA 27559 Query 2411552 CGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2411593 | || |||| ||||||||| ||||| ||||| ||||| |||| Sbjct 27560 CATCAAGGTACTGCTCGTCAAGGGCTTGCATAAGCGGATAGA 27601 >seq290 Length=228044 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 ||||| ||| ||| ||| |||| ||||||||||| || ||||||| ||| ||||| | Sbjct 221248 GCCTCAGTGGCGACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCAGGATGGACATGGCG 221189 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 221188 CGGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGAC 221148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916204807546649