Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq297 86.0 2e-11 >seq297 Length=250371 Score = 86.0 bits (94), Expect = 2e-11 Identities = 151/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 309634 GTAGCATTGACCCTCTCGCCCC-TCAAAGCTCCAACCTTCGATGCGACAATCTCCATCAA 309692 ||||||| ||| |||||||| | | ||||| ||||| || || | ||| | ||| Sbjct 210741 GTAGCATC-ACCTTCTCGCCCGGTGATGGCTCCGACCTTGGAAAGGAGACACTCGACCAA 210799 Query 309693 CTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTCAGGTCTCAT 309752 | ||| || ||||||||||| |||||||| | |||||||||| || || || | | Sbjct 210800 ATGGGCAATGGTCATACGAGAGGGAATGGCGTGCGGGTTGATGACAAGATCGGGAGTGAC 210859 Query 309753 TCCGGTGATTGGGTTGAAAGGCATATCTTC-TTCAGGTACAATCAAACCAATAGTTCCCT 309811 ||| ||| |||||||||||||||| | |||| | | ||| || || |||| Sbjct 210860 ACCGTCTCTTG---TGAAAGGCATATCTTCGTGTCTGTAC-GTGAGACCGATGGTACCCT 210915 Query 309812 TTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845 | || |||| | ||||| |||||||| || || Sbjct 210916 TCTGTCCGTGACGAGAAGCGAACTTGTCGCCGAT 210949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951964621218248