Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq308 91.5 1e-13 >seq308 Length=314950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 |||||||| | || |||||||||||| || || ||||| || || |||||||| || ||| Sbjct 275382 TGTCCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCC 275441 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | ||||| || || || || || || || | |||| | ||||| || || Sbjct 275442 GAGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGT 275501 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || |||||||| ||||| || | || |||||| | || | ||||| | || Sbjct 275502 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCA 275561 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | || || || ||||| || | || || || || |||||||| Sbjct 275562 ACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217364310131