Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq289 87.8 2e-12 seq308 86.0 6e-12 >seq289 Length=227737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || | ||||| ||||||| || | | || ||||| ||| |||| ||| Sbjct 105384 GAGGCCGTTACAATCGAGCAGGAGTTCTTGTCCGATGCCCTGCCTTGTGCCCTGCTCGGC 105325 Query 47106 ATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 |||||||| | |||| |||||| | || |||||||| || || || || ||| || || Sbjct 105324 ATGAACGC-CGGTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGCCTGCTGCTGGC 105266 Query 47165 GCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 ||||| | || || | | || || || || || || || ||| | ||||| || Sbjct 105265 CCTCGGCAACCCCAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTC 105206 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || | ||||| ||||| || |||||||| || || || || || Sbjct 105205 TCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 105161 >seq308 Length=314950 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | ||||| || || |||||||||||| | ||||| || || Sbjct 275630 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCCTC 275689 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| ||||| | |||| |||||||| || || ||||| ||||| || ||||| Sbjct 275690 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTG 275749 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || |||| | || | || || | || ||| || || | || | || || Sbjct 275750 AATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTCTT 275809 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 275810 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608870562760