Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq289 143 4e-28 seq332 131 2e-24 seq315 122 1e-21 >seq289 Length=227737 Score = 143 bits (158), Expect = 4e-28 Identities = 210/291 (72%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||| || || |||||||| |||||| |||| ||| Sbjct 106049 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGATCTCTC 105991 Query 1455839 CGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | ||| | ||||| | ||| | | ||| |||||||| |||||| Sbjct 105990 CAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGTTTCTTCATCTCC 105933 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||||||||||| ||| ||||| ||| ||| ||||| || ||||||||| | || || Sbjct 105932 CACGTCCTCGC-TTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTTGTCGAGCG 105874 Query 1455954 CTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 ||| | || ||||| || | || |||||||| | || ||||| |||||||| | Sbjct 105873 CTTCTCTGGC-GAGGTACAGATCCCCGAGGCACGATGCTTCTACGGCTTCCAGATTATGA 105815 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 | || ||| ||||| | || || ||||| ||||| |||||||||||| ||| Sbjct 105814 TGGAGAACGTCCACGCCGAGACATACTCTCTCCTCATCGACACCTACATCA 105764 Score = 127 bits (140), Expect = 3e-23 Identities = 189/261 (72%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||| ||||||||| |||||| | ||||| |||| ||| | ||||| | Sbjct 105393 ATCATCACCGAGGCCGTTACAATCGAGCAGGAGTTCTTGTC--CGATGCCCTGCCTTGTG 105336 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | || |||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 105335 CCCTGCTCGGCATGAACGCCGGT-CTCATGTGCCAGTACATTGAGTTC-GTCGCCGACCG 105278 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| ||| |||||| | ||||||||| | ||||||| ||| | | Sbjct 105277 CCTGCTGCTGGCCCTCGGCAACCCC-AAGCACTACAACGCCACCAACCCCTTCGACTTCA 105219 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| |||||| |||| ||| || ||| Sbjct 105218 TGGAGAACATCTCTCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTACC 105159 Query 1456760 CCAAGGCCGGCGTCACCGCCA 1456780 ||||| || |||| |||| Sbjct 105158 AGAAGGCTGGTGTCATGGCCA 105138 >seq332 Length=679357 Score = 131 bits (144), Expect = 2e-24 Identities = 209/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| |||||||||| ||| ||||| ||| |||| || ||||| |||||| Sbjct 210161 ACATACGACTACATGTCGCAGAAGTACTTCACACACGCGTCGCCGACACTCTTCAATGCC 210102 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || ||| |||| || || ||||| || | |||||||||| || || Sbjct 210101 GGCACACCATCCCCACAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGCATT 210042 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 ||||| ||||| |||||||| ||| |||||| | ||||||||| | || ||||| || Sbjct 210041 GAGGGTATCTACGACACGCTGAAGACCTGCGCGTTGATCTCCAAGACTGCTGGCGGTATT 209982 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || ||| | || ||| | ||| | ||| | | || |||||||| Sbjct 209981 GGCCTCAACGTCCACCGCATTCGTGCCACCGGCTCGTACATTGGAGGAACCAACGGAACA 209922 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||||| | | || ||||| || || | ||| |||| || || || ||||||||| Sbjct 209921 TCAAACGGTTTGATTCCTATGCTCCGTGTCTACAACAACACCGCCCGTTATGTCGACCAG 209862 >seq315 Length=328129 Score = 122 bits (134), Expect = 1e-21 Identities = 208/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 332847 CGATTTGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCT 332906 ||| ||||||||| || ||||| | | | |||||| || |||||| |||||| | || Sbjct 268209 CGACTTGGGCGTCTGTAAGGCGGGCGTATCTCAGGATAGCGCAACGGGACTGCAGAGGCT 268150 Query 332907 CGATGACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTT 332966 |||||| | | ||| |||||||| | || || ||||| || | | | ||| Sbjct 268149 CGATGATCTTGTTGGACTGATTGCAGGCGAATGCGAATCGCGTGGTTGCGCTGTAAATTT 268090 Query 332967 CCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGG-CGTGAGGCAGTCGGCCTCGTCGAGG 333025 |||| || |||||||| || || || ||||| ||| | || ||| || ||||| ||| Sbjct 268089 CCATTGTGCGGCGGAGGGCTTGCTGAGC-GCCGGACGTCATGCTGTCTGCTTCGTCAAGG 268031 Query 333026 ATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATG 333085 |||| || ||| ||||| || |||||||| || | ||| ||| | ||||| Sbjct 268030 ATGACGAGCTTCTGGCGGCCAGGCGGCAGAGTGACTTTCTTCTGTGCGAAGCCCTTGATC 267971 Query 333086 ATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144 | || || || || || | ||||||||||| || || ||||| || || ||||| || Sbjct 267970 CTGTTACGGACCACATCAATACCGCGCTCGTCAGAGGCATTGAGCTCAAGAACGGCTTC 267912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177773487331342