Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq308 105 6e-18 seq334 91.5 1e-13 >seq308 Length=314950 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | || |||||| ||||||||||| || | | || || |||| Sbjct 275399 CAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTC 275458 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||| || || || |||| ||||||||||| | || | | ||||||||| Sbjct 275459 CTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 275518 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | | |||||||| || || ||||||| ||||| || Sbjct 275519 CTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAACCTCCAATGTGATGGT 275578 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | || || || || |||||||| Sbjct 275579 CTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || |||| || ||||||||||| || || Sbjct 275648 CTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAA 275707 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | || |||||| ||| ||||| ||||| | Sbjct 275708 GATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTT 275767 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||| || ||||| | ||||| || || || ||||| || || || Sbjct 275768 ATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGAC 275827 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 275828 GAAGATCTGCAT 275839 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || || |||||||| || ||||| Sbjct 276158 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAA 276217 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | || Sbjct 276218 GATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGT 276276 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | || || || |||||||| | |||||||| ||||| || Sbjct 276277 TGTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTACCGGT 276325 Score = 98.7 bits (108), Expect = 9e-16 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || | || || ||||||||||| || || Sbjct 275876 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAA 275935 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||||| |||||| ||||| || Sbjct 275936 GATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTCGACTTCA-CGT 275994 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | |||||| ||| || ||||| | ||||| || || || |||| Sbjct 275995 TGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTTCCGGTCA 276045 >seq334 Length=270071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || |||| || |||||||| || || || Sbjct 22325 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 22266 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||||||||||| |||| || |||||||||| |||||| Sbjct 22265 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 22218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791396746280