Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq308 116 4e-21 seq332 87.8 2e-12 >seq308 Length=314950 Score = 116 bits (128), Expect = 4e-21 Identities = 174/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 134469 GCCTGCG-CCGTTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTT 134527 ||| ||| |||| || |||||| | || |||| ||| | ||| || ||||| ||||| Sbjct 275366 GCCCGCGACCGTCTACTGTCCTCCGCGCAGACGCAGCACCAAGTGCAGAGTGGACTCCTT 275425 Query 134528 TTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAA 134587 |||||||||||||| | ||| | ||| || ||||| || ||||| ||||||| Sbjct 275426 CTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCTGCGAAAATCAG 275485 Query 134588 ACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAA 134647 |||||||| || || || || || || || || || || || ||||| ||| | Sbjct 275486 GCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGAT 275545 Query 134648 TGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAAT 134707 ||||||| || || || || | || ||||| || ||||| | || || |||||||| Sbjct 275546 TGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAAT 275605 Query 134708 TTGCAT 134713 ||||| Sbjct 275606 CTGCAT 275611 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| | ||| || || ||| Sbjct 276141 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCG 276200 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| ||||| |||||||| || || || |||||||| || || || Sbjct 276201 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 276260 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | || || || || ||||| || || || || || ||| Sbjct 276261 ATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAGGGTGATCGTCTTA 276320 Query 134685 CCGGT 134689 ||||| Sbjct 276321 CCGGT 276325 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| ||||| || |||||||||||| | Sbjct 275613 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 275672 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| || || || || || | ||||||||| || || || Sbjct 275673 AGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 275732 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || || | |||||| ||||| || || Sbjct 275733 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACC 275792 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || || || ||||| || ||||| Sbjct 275793 TCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || || || || ||||| ||||| ||||||||||||||| | |||| | Sbjct 275850 AGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGG 275909 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || || | ||||||||| || || || || || || Sbjct 275910 CCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCC 275969 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | ||||||||||| || || |||||||| Sbjct 275970 TTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTG 276029 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 276030 ATGGTCTTTCCGGT 276043 >seq332 Length=679357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 274/421 (65%), Gaps = 5/421 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| |||| || || || ||||| ||| || |||||||| ||| | Sbjct 210224 CAGCACATGCTCATGCGTGTCGCTGTTGGCATCCACATGGAGGACATTGAGAAGGCCATC 210165 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||| ||| | || || ||||| ||||| || | || Sbjct 210164 GAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCGTCGCCGACACTCTTCAAT 210105 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || |||||| | || || |||| || || || | | |||| || |||||| Sbjct 210104 GCCGGCACACCATCCCCACAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGC 210045 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGG 7802 || || || || ||| |||||||| ||||| || ||||| || || ||||| Sbjct 210044 ATTGAGGGTATCTACGACACGCTGAAGACCTGCGCGTTGATCTCCAAG-ACTGCTGGCGG 209986 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || || ||||| || | | || |||| ||| ||| | |||||||| Sbjct 209985 TATTGGCCTCAACGTCCACCGCATTCGTGCCACCGGCTCGTACATTGGAGGAACCAACGG 209926 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 || | | | |||||| || ||| | || || | ||| ||| | | || |||| || Sbjct 209925 AACATCAAACGGTTTGATTCCTATGCTCCGTGTCTACAACAACACCGCCCGTTATGTCGA 209866 Query 7923 CCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || || |||| || || ||||||||| | |||||||||||||| || Sbjct 209865 CCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTCGAGCCGTGGCACGCTGA 209806 Query 7980 C 7980 | Sbjct 209805 C 209805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395929865320