Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq332 228 1e-54 >seq332 Length=679357 Score = 228 bits (252), Expect = 1e-54 Identities = 561/842 (67%), Gaps = 13/842 (2%) Strand=Plus/Plus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| ||||| |||||| | |||||||| | || || || || || || || Sbjct 209392 TTGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAAATTCGAG 209451 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || ||| || || | ||||| ||||| |||||| ||||| ||||||||||||||| Sbjct 209452 CTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGC 209511 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC 111429 ||| |||| | || ||||| ||||| | | ||||| || | ||| | | || | | Sbjct 209512 ATGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCA 209571 Query 111430 TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 || ||| | || | || |||||| ||||||||| ||| ||||| | ||||| Sbjct 209572 CGG-ACAGTCTCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTC 209630 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 111549 || || |||| | ||| || || || || ||||| | ||| | ||| | || Sbjct 209631 GTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCC 209690 Query 111550 ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 || | || |||| |||||| || || |||||||||| | | |||||||| | Sbjct 209691 GTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATAGAAGAGATCGCG 209750 Query 111610 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 111669 | ||| |||| || | || ||||| | | || ||||| | | || || || Sbjct 209751 AGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCAAAGACGTCAGC 209810 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTA 111725 |||||| ||||| || |||| || | || || | | | ||| | | || | | Sbjct 209811 GTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCC-ACCCTGGTCGA 209869 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| || || ||| ||| | || || ||||| ||||| | ||| | |||| || | Sbjct 209870 CATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGTTTGATGTTCCGT 209929 Query 111786 TTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 | || || | ||| ||||| |||| | | |||| || | |||||||| Sbjct 209930 TGGTTCCTCCAATGTACGAGCCGG--TGGCACGAATGCGGTGGACGTTGAGGCCAATACC 209987 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 ||||| ||| ||||| ||| || | | || || | |||||||| | || Sbjct 209988 GCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGATACCCTCAATGCT 210047 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 ||||||||| || |||| |||||||| |||||||| || |||||| || ||||| Sbjct 210048 GTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGGTGTGCCGGCATT 210107 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCA 112022 |||||| || || | ||||| |||| ||| | || ||||| | |||||||||||| | Sbjct 210108 GAAGAGTGTCGGCGACGCGTGTGTGAA-GTACTTCTGCGACATGTAGTCGTATGTCTCGA 210166 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | | |||||||| ||| ||||||||| | ||||| ||||||| ||||| ||| | Sbjct 210167 TGGCCTTCTCAATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGCTGCG 210226 Query 112083 GG 112084 || Sbjct 210227 GG 210228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028930493600