Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq308 212 2e-49 seq204 102 2e-16 seq297 87.8 5e-12 >seq308 Length=314950 Score = 212 bits (234), Expect = 2e-49 Identities = 894/1401 (64%), Gaps = 22/1401 (2%) Strand=Plus/Plus Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310 |||| || | || || || ||||| || || |||||||| ||||| || || | ||||| Sbjct 118905 ATGACCGCATTGAGATTATCGCAAACGACCAGGGTAACAGGACAACACCGTCCTTCGTTG 118964 Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370 | || ||||| ||||||||| | || ||||| || || || || || | || || | Sbjct 118965 CCTTCACCGACACTGAGCGTCTCATCGGTGACTCCGCGAAGAACCAGGTCGCCATGAACC 119024 Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACA 349424 | | || || || || || || ||||| || |||||| | ||||| | |||| Sbjct 119025 CTATCAACACAGTCTTCGACGCCAAGCGCCTCATTGGTCGCAAGTTCAACGATGCTGAGG 119084 Query 349425 AATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATA 349484 || || | ||| | || || || || || | || || | ||| | || | Sbjct 119085 --TC----CAGGCCGATATGAAGCACTTCCCCTTCAAGGTCATTG-ACAAGGC--TGGCA 119135 Query 349485 AACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTT 349544 | || | || |||| || | || || || | || || ||| || || || | Sbjct 119136 AGCCTGTCATCCAGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACACCTGAGGAGATCT 119195 Query 349545 CATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAA 349604 | || ||||| | || || |||| ||| | ||||| | || | |||| ||| || | Sbjct 119196 CCTCCATGGTCCTCGTCAAGATGAGGGAGACCGCTGAGTCCTACCTCGGTGGAACCGTCA 119255 Query 349605 CTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAG 349664 | ||||| | || || || ||||| || || || |||||||| || || || | Sbjct 119256 ACAACGCTGTCGTCACAGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGG 119315 Query 349665 ATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAG 349724 ||||||| |||||| || | || || || | || || || || ||||||||||| | Sbjct 119316 ATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTG 119375 Query 349725 CAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 | ||||| || || ||||| || | || ||| || || | || || || || | Sbjct 119376 CCATTGCCTACGGTCTTGACAAGAAGACTGAGGGTGAGCGCAACGTCCTCATCTTCGACT 119435 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTA 349844 | || |||||||| || ||||| || || | || | || ||||| || || || || | Sbjct 119436 TGGGAGGTGGTACATTCGATGTCTCCCTCTTGACCATCGAGGAGGGTATCTTCGAGGTCA 119495 Query 349845 AAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGC 349904 | | ||||| ||||| || || | ||||| || || || || || |||||||| | Sbjct 119496 AGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACC 119555 Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCA 349963 | || || || || ||||| |||| || | || || || || | || Sbjct 119556 ACTTCACAAATGAGTTCAAGCG-AAAGCACAAGAAGGACCTTACCTCCAACGCTCGTGCT 119614 Query 349964 ATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAA 350023 | ||||| || | ||||| || || ||||| ||||| || | || || || | || Sbjct 119615 CTCCGTCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCTCTCTTCCTCTGCTCAG 119674 Query 350024 ACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGT 350083 ||||| ||||| || || || || || || | || |||| | || || || ||| Sbjct 119675 ACCTCCATTGAGATCGACTCCCTGTACGAGGGTATTGACTTCTACACCTCGATCACCCGT 119734 Query 350084 GCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAA 350143 ||||| || || || | || ||| || || | | || ||||| || || || Sbjct 119735 GCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAGCGT 119794 Query 350144 GTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGG 350202 || | || || || || | | | || | | | || | ||| | || ||||| Sbjct 119795 GTCCTCCGTGACGCCAAGATCGACAAGTCCTCCG-TCCACGAGATCGTTCTCGTCGGTGG 119853 Query 350203 TTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACC 350262 || || |||||||| || ||||| || | | || || || || || ||||| || || Sbjct 119854 CTCCACCCGTATTCCCAAGGTTCAGAAGATGGTCTCCGACTTCTTCAACGGCAAGGAGCC 119913 Query 350263 TTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 | || || || || ||||| || ||||| || |||||||| || ||||| |||| Sbjct 119914 CAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGCTAT 119973 Query 350323 TTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCC 350379 | ||||| | | ||| || | | || | | || || || || | || Sbjct 119974 CCTGTCTGGTGACACATCTTCCAAGTCCACCAACGAGATTCTCCTTCTCGACGTTTCGCC 120033 Query 350380 ACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAG 350439 || || || || | || ||| |||||| || ||||||| ||| || | || | Sbjct 120034 GCTCTCTCTCGGTATCGAGACTGCTGGTGGTGTCATGACTGCTCTCATCAAGCGCAACAC 120093 Query 350440 TACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGT 350499 ||| | || || || |||||| | || || || || || || ||||| | || Sbjct 120094 CACTATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCAGCGACAACCAGCCTGGTGT 120153 Query 350500 AACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGA 350559 ||||| || | || ||||| ||||||||||| || || || || || || | Sbjct 120154 CCTCATTCAGGTCTACGAGGGTGAGCGTGCTCGCACAAAGGACAACAACTTGCTCGGCAA 120213 Query 350560 ATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTT 350619 || || | || ||||| || || | || || ||||||||||| || | || Sbjct 120214 GTTCGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTCCCTCAGATTGAGGTTACCTT 120273 Query 350620 CGATATTGATTCAAATGGTAT 350640 |||| ||||| | || ||||| Sbjct 120274 CGATGTTGATGCCAACGGTAT 120294 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| | ||||| || ||||| || || || || || || Sbjct 275609 CATACCACCGCGGAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 275668 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || || || || || || || ||||| ||||| ||||| ||||| || || Sbjct 275669 GGAAAGTGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGG 275728 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || | || || ||||| || | || || | || Sbjct 275729 AGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTC 275788 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| |||||||| | ||||| || || | || || || || |||||||| Sbjct 275789 AACCTCAAGTGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 Score = 123 bits (136), Expect = 8e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || |||||||| || || ||||| || ||||| || || || Sbjct 275837 CATACCACCACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTC 275896 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || ||||| ||||| ||||| ||||| || || Sbjct 275897 GGAGAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGG 275956 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || || || | || || | || Sbjct 275957 GGGAATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTC 276016 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || || || | ||||||||||| | ||| Sbjct 276017 GACCTCGAGAGTGATGGTCTTTCCGGTCACTGT 276049 Score = 111 bits (122), Expect = 5e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || || || || || || Sbjct 276119 CATACCACCACGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 276178 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || |||||||| | || ||||| || || Sbjct 276179 GGACAGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGG 276238 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| ||||| || ||||| || || ||| || || || || || | ||| || | | Sbjct 276239 AGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCCGAAGACT 276297 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| ||||| Sbjct 276298 CCACCTCAAGGGTGATCGTCTTACCGGT 276325 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || ||||| || || || || | || || || || |||| Sbjct 275405 CAAG-TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAA 275463 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || ||||| || || || || || ||||| ||||| || || || || || ||||| | Sbjct 275464 GCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGA 275523 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || ||||| || || | || | ||||| || | ||| | ||||| | Sbjct 275524 TCTTGGACTTGACATTGTCGATTGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTGC 275583 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| ||||| || || ||||||||||| Sbjct 275584 CGGTGAGTGTCTTGACGAAAATCTGCAT 275611 >seq204 Length=97000 Score = 102 bits (112), Expect = 2e-16 Identities = 248/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 ||||| || || || | |||||| | | || |||||||| ||||||| ||| || | Sbjct 31890 CCCGAGGAGATCTCCGCTATGGTTCTTGGCAAGATGAAGGAGGTTGCTGAGAGC-TACCT 31832 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || || || | | || ||| | ||||| || ||||| || || || || ||||| Sbjct 31831 GGGCGAGGAGGTCAAGAACGCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCTCAGCG 31772 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 |||| || || || || || | || || || | || ||||| | | | || || Sbjct 31771 CGCTGCCACCAAGGACGCCGGTACTATCGCTGGTCTTAACGTTCTCCGCGTTGTCAACGA 31712 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766 || || || || || |||| || || ||||| || | ||||| ||| | Sbjct 31711 GCCTACCGCCGCCGCTCTTGCGTACGGTCTTGACAAGGTC---GACCA-GAAGGAGCGCC 31656 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | ||||| | | ||| | |||||||||||||| ||||| || | || || |||| | Sbjct 31655 AGGTTCTTGTCTACGATCTTGGTGGTGGTACTTTCGATGTCTCCATCCTCACCATTGAGG 31596 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 | || |||| || ||| | | || |||||||| || || |||||||| || ||||| | Sbjct 31595 ACGGCGTTTTCGAGGTTCAGTCTACCGCTGGTGACACTCACCTTGGTGGTGAGGATTTCG 31536 Query 349887 ATAATCGTCTC 349897 | || ||| || Sbjct 31535 ACAACCGTGTC 31525 >seq297 Length=250371 Score = 87.8 bits (96), Expect = 5e-12 Identities = 112/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 377443 AATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCA 377502 || ||||| | || || || |||||| |||| || ||| ||||| | ||||| ||| Sbjct 74537 AAGATTTCCTTAAGACGAGGAACACCAAGTGTGACGTTC---TTAGAAGACACACCGGCA 74593 Query 377503 AAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATA 377562 || |||||||| || || || | || || | |||||||||||| || || || || | Sbjct 74594 AAATGGAAAGTGTTGAGCGTCATCTGTGTCGCGGGCTCACCAATAGATTGAGCAGCCAAG 74653 Query 377563 ACGCCAACCATTTCTCCAGGATTGACAATAGCCT 377596 || || ||||| || |||||| |||| ||||| Sbjct 74654 ACACCGACCATCTCACCAGGAGCGACAGCAGCCT 74687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246809048973