Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq332 224 1e-53 seq289 98.7 1e-15 >seq332 Length=679357 Score = 224 bits (248), Expect = 1e-53 Identities = 483/714 (68%), Gaps = 26/714 (4%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||||||| ||| || |||||||| || ||||| |||| || || ||||| Sbjct 210164 GAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCGTCGCCGACACTCTTCAAT 210105 Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || ||| ||| |||||||| ||||||||| | | |||||||| ||| Sbjct 210104 GCCGGCACACCATC-CCCACAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAG 210046 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || |||||||| ||||| ||| || || ||||||||| | || || Sbjct 210045 CATTGAGGGTATCTACGACACGCTGAAGACCTGCGCGTTGATCTCCAAGACTGCTGGCGG 209986 Query 53422 TATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| || || || || | || | ||||| | |||| | || || || ||| Sbjct 209985 TATTGGCCTCAACG--TCCACCGCATTCGTGCCACCGGCTCGTACATTGGAGGAACCAAC 209928 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || | | || | | ||||||||||| |||| ||||||||| ||||| || ||| Sbjct 209927 GGAACATCAAACGGTTTGATTCCTATGCTCCGTGTCTACAACAACACCGCCCGTTATGTC 209868 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||||||||| |||||| || | || |||||||||||||||||||||||||| Sbjct 209867 GACCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTCGAGCCGTGGCACGCT 209808 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CG 53658 ||| | | | || ||||| ||| | ||| || || | || ||| | || ||| || Sbjct 209807 GACGTCTTTGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCG-TGCTCG 209749 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718 || || || ||| |||||||||| || ||||||||||| ||| | || ||| Sbjct 209748 CGATCTCTTCTATGCTTTGTGGATTCCCGATCTCTTCATGCAGCGTGTGCAAGAGAACGG 209689 Query 53719 GGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGA 53778 |||||| ||| ||||| || ||||||||||| |||||| | |||||||| || || Sbjct 209688 CGAGTGGACCCTTATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGCGACGA 209629 Query 53779 GT---------TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829 || || |||||| ||| || | | | | || || ||| ||| Sbjct 209628 GTTCGTTGCCCTTTACGAGAAGTA-CG--AGAAGGAGGGTCGTGGTCGC------GAGAC 209578 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| || | || | ||| | || || || || ||| ||||| || | || Sbjct 209577 TGTCCGTGCTCAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGACTGAGACTGGTAACCC 209518 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | |||| |||||||||| | | |||| ||||||||||||||||||| |||| Sbjct 209517 CTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGG 209464 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| |||||||| |||||||||||||| |||| || | ||| Sbjct 208637 GCTGACCGTGGTGCCTTCATTGACCAGTCTCAGTCTCTGAACATTCACATGAAGGAGCCT 208578 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | || ||||||||| || |||||| || |||||||| || Sbjct 208577 ACCATGGGCAAGATCACATCCATGCACTTTGCTGGATGGAAGCTTGGCCTCAAGACTGGA 208518 Query 55907 ATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 208517 ATGTACTACCTCCGAACC 208500 >seq289 Length=227737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || |||||||| ||||||||||||| ||| ||||||| ||| ||||| |||||| Sbjct 105503 AGACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATGGACGCGAACGAACCGCTGAAG 105562 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||||||||| ||| || || ||||||||||| | ||||| Sbjct 105563 AAGATGCCTTCAACAGCAGCGAAAGCGACAAGGCGGTTGGCGAA 105606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213325481800