Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq332 201 1e-46 seq308 179 4e-40 seq306 104 3e-17 seq334 95.1 1e-14 >seq332 Length=679357 Score = 201 bits (222), Expect = 1e-46 Identities = 566/860 (66%), Gaps = 17/860 (2%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| || || ||||| || || ||||| |||| | || |||||| ||| || ||||| Sbjct 209382 GGAGGCAAGGTTGCAGACAGCAACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCA 209441 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 |||||| || ||| ||||| ||||| |||||||| ||| |||| ||| || Sbjct 209442 CAAATTCGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATC 209501 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||||||| |||| | ||| |||| ||||| ||| | || || ||||||| ||| | Sbjct 209502 CTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGAATGGCGTACCAGAG 209561 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | || ||| || ||| || || | | ||||| ||||| | Sbjct 209562 CTTCTGAGCACGGACAGTCTCGCGACCACGACCCTCCTTCTCGTACTTCTCGTAAAGGGC 209621 Query 81147 GTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206 |||||| | | |||| | |||| |||| | ||||||||||| || ||||| ||| Sbjct 209622 AACGAACTCGTCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATAAGGGT 209681 Query 81207 CCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 ||| || | |||||||| ||| || |||||| || || ||||| | || Sbjct 209682 CCACTC---GCCGTTCTCTTGCACACGCTGCATGAAGAGATCGGGAATCCACAAAGCATA 209738 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| || ||||| ||| || ||||||| | || ||||| | || ||||| ||| Sbjct 209739 GAAGAGATCGCGAGCA-CGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGC 209797 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 | | || ||| || ||||| ||||| || || | ||| | | || ||| || Sbjct 209798 CAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGC 209857 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| ||| |||||||| || ||| | ||||| | |||||| || | ||| | Sbjct 209858 CACCCTGGTCGACATAACGGGCGGTGTTGTTGTAGACACGGAGCATAGGAATCAAACCGT 209917 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGA 81497 ||| ||||| || || | || ||| || |||| || | | || ||| Sbjct 209918 TTGATGTTCCGTTGGTTCCTCCAATGTACGAGCCGGTGGCACGAATGCGGTGGACGTTG- 209976 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 || || || || || | ||| || ||| || || |||| || || || || Sbjct 209977 -AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTCAGCGTGTCGTAGAT 210035 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 ||||| ||||| || | |||||||| | | ||| ||| ||||||||| ||| | Sbjct 210036 ACCCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTGGGGATGG 210095 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 || |||||||||||| ||||| || | |||||| |||| || | ||||| ||| Sbjct 210096 TGTGCCGGCATTGAAGAGTGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAGTC 210155 Query 81678 ATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 || || || || | ||| || || ||| || || | ||| |||||||| | Sbjct 210156 GTATGTCTCGATGGCCTTCTCAATGTCCTCCATGTGGATGCCAACAGCGACACGCATGAG 210215 Query 81738 CATGTACTG-GGGCGTCTCG 81756 ||||| ||| ||||| |||| Sbjct 210216 CATGTGCTGCGGGCG-CTCG 210234 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || |||||||| || ||||||||||| |||||| || | |||||| || Sbjct 208501 GTTCGGAGGTAGTACATTCCAGTCTTGAGGCCAAGCTTCCATCCAGCAAAGTGCATGGAT 208560 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||||||||||||||||| ||| Sbjct 208561 GTGATCTTGCCCATGGTAGGCTCCTTCATGTGAATGTTCAGAGACTGAGACTGGTCAATG 208620 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 || || ||||| || || ||||| Sbjct 208621 AAGGCACCACGGTCAGCGGCCAT 208643 >seq308 Length=314950 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||||||||| || |||||||||||||| Sbjct 275839 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACACTTGAGGTTGAGTCGTCG 275780 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || |||||||| |||||||| || ||||| |||||| Sbjct 275779 GACACAATCGATAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAG 275720 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 275719 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACACTTTCCGACTACAAC 275660 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| | || | ||||| |||||||| Sbjct 275659 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTCCGCGGTGG 275613 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || ||||| ||||| ||||| || | ||| | || ||||| | Sbjct 276043 ACCGGAAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGTCG 275984 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| ||||||||||||||||| || || ||||||||| Sbjct 275983 AAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTCGCTGGTAAG 275924 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || || |||| || ||||| | ||||| || | || ||||| ||||| || ||| Sbjct 275923 CAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACACTGCAT 275864 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| ||||||| || ||||| Sbjct 275863 CTTGTCCTGCGTCTGCGTGGTGG 275841 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || | ||||||||||| | Sbjct 275611 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 275552 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 275551 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 275492 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| || ||||| | || || || | ||||| || Sbjct 275491 CAGCGCCTGATTTTCGCAGGAAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAAC 275432 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| |||||||| || | || ||||||| ||||| ||||| Sbjct 275431 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTGCGCGGAGGACA 275382 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || |||||||| ||||| |||| ||| | || | ||| Sbjct 276325 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCGGATACCATCGACAACGTCAAGAGC 276266 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || |||||||||||||||||||| | || ||||| || ||| Sbjct 276265 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAG 276206 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| ||| || || | ||||| || |||| ||||| || ||||| || Sbjct 276205 CAGCTCGAGGATGGTCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 276146 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 276145 CTTGTCCTTCGCCTTCGTGGTGG 276123 >seq306 Length=305464 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 48590 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 48649 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| || ||||| || || || | Sbjct 48650 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTC 48709 Query 27619 CGTCTTCGCGGTGGA 27633 || || || |||||| Sbjct 48710 CGCCTGCGTGGTGGA 48724 >seq334 Length=270071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | || Sbjct 22206 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATC 22265 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| ||||| || ||||| | || || || | ||||| || |||| ||||| Sbjct 22266 TTCGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAG 22325 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | || || || ||||| Sbjct 22326 TCGACCCTCCACTTGGTCCTCCGCCTCCGTGGTGG 22360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307612607920