Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq308 102 5e-17 seq334 86.0 4e-12 >seq308 Length=314950 Score = 102 bits (112), Expect = 5e-17 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || |||||| |||||| |||||||| || || || || || || Sbjct 275394 AGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGG 275453 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | ||||| ||||| || || | |||||| Sbjct 275454 CCGTCCTCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCC 275513 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTCCACTTCCAC 34664 ||||| |||| || | || || | |||||| ||||| ||| || |||| Sbjct 275514 TTGTCCTGGATC-TTGGACTTGACATTGTCGATTGTG---TCGCTAGACTCAACCTCCAA 275569 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | || || || ||||||||||| Sbjct 275570 TGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| || ||| |||||| |||||||| || || || || || || Sbjct 275850 AGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGG 275909 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || ||||| || || || | |||||| ||||| || || | |||||| Sbjct 275910 CCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCC 275969 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 275970 TTGTCCTGGATCTT 275983 >seq334 Length=270071 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||| || ||||| || || ||||| || || |||| ||| Sbjct 22342 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCA 22283 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || || ||||| |||||||| || | ||||||||||| | Sbjct 22282 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 22223 Query 34618 ATCTT 34622 ||||| Sbjct 22222 ATCTT 22218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728100215103