Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq308 96.9 3e-15 >seq308 Length=314950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||| ||| | || ||||| || || || |||||||| | || || | || || Sbjct 276045 TGACCGGAAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGT 275986 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || ||||| || || || || || || || |||||| | || | ||| || | Sbjct 275985 CGAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTCGCTGGTA 275926 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | ||||| | ||| | ||||| ||||||||||| |||||||| || | | Sbjct 275925 AGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACACTGC 275866 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || ||||| |||| ||||| || Sbjct 275865 ATCTTGTCCTGCGTCTGCGTGGTGGTAT 275838 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || || || | | Sbjct 275611 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 275552 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || ||||| || || Sbjct 275551 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 275492 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || | || ||| | || | || || |||||| Sbjct 275491 CAGCGCCTGATTTTCGCAGGAAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAAC 275432 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || ||||| ||||| |||| || || Sbjct 275431 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTGCGCGGAGG 275385 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| | || || ||||| ||||| | || || | || || | ||||| Sbjct 276325 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCGGATACCATCGACAACGTCAAGAGC 276266 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| |||||||| || || || || ||||| || || | |||||||| Sbjct 276265 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAG 276206 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 || | || || || || | ||||| |||||||| || ||||||||||| Sbjct 276205 CAGCTCGAGGATGGTCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGAC 276153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916274336320