Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq311 82.4 7e-11 >seq311 Length=328692 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 |||||||| || |||| || ||||||||||| || ||| | |||||||| |||||||| Sbjct 189677 GAGGAGGGAGATCTGGGGCCTGTCTACGGGTTTCAATGGCGGCACTTTGGTGCGGAGTAC 189736 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 ||| ||| || ||||| | || || || | ||||||||| || | | || || || Sbjct 189737 AAGGGTCACGATGCAGACTACACAGGGCAAGGTGTGGACCAGCTCGCTG-AAGTCATTGA 189795 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 | ||||| ||| | ||| | || || | || |||| ||||| || || Sbjct 189796 TAAGCTGAAGAACCGCCCATACGACCGGAGAATTATATTGAGCGCATGGAATCCTGCAGA 189855 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618 |||| |||||| || || || ||||||| | ||| || ||||||||| Sbjct 189856 TCTCAAAAAGATGGCACTGCCGCCTTGCCACA-TGTTTGCGCAGTTCTACGTC 189907 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || || || |||||| |||||| | Sbjct 189907 GACGTAGAACTGCGCAAACA-TGTGGCAAGGCGGCAGTGCCATCTTTTTGAGATCTGCAG 189849 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| |||| || | || || | ||| | ||| ||||| | || || | Sbjct 189848 GATTCCATGCGCTCAATATAATTCTCCGGTCGTATGGGCGGTTCTTCAGCTTATCAATGA 189789 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 | | | || ||||||||| | || || || | ||||| || ||| ||| |||||| Sbjct 189788 CTT-CAGCGAGCTGGTCCACACCTTGCCCTGTGTAGTCTGCATCGTGACCCTTGTACTCC 189730 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 || |||||||| | ||| || ||||||||||| || |||| || |||||||| Sbjct 189729 GCACCAAAGTGCCGCCATTGAAACCCGTAGACAGGCCCCAGATCTCCCTCCTC 189677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260209117520