Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq308 168 2e-36 seq334 105 2e-17 seq332 100 7e-16 seq306 93.3 1e-13 >seq308 Length=314950 Score = 168 bits (186), Expect = 2e-36 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || || ||||| || || | ||||| | |||||| Sbjct 275856 AGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCT 275915 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || ||||| || |||| || ||||||||| Sbjct 275916 TCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 275975 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| || || |||||||||||||| ||| Sbjct 275976 TGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 276035 Query 211083 TTTCCCGT 211090 ||||| || Sbjct 276036 TTTCCGGT 276043 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| ||||| ||||| || |||||||| || || | || || Sbjct 276128 ACGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 276187 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || ||||| | ||| || ||||| ||||||| || Sbjct 276188 GCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCC 276247 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| |||||||| || || || ||||| || Sbjct 276248 TTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAG 276307 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||||||||| || |||| Sbjct 276308 GGTGATCGTCTTACCGGTGA 276327 Score = 141 bits (156), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || || ||||| || |||| || || | || || Sbjct 275400 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 275459 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| |||||||| || ||||| || |||||||| || | || ||||||||| Sbjct 275460 TCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 275519 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||| ||||| ||| |||||||| | ||||| Sbjct 275520 TGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGA---CTCAACCTCCAATGTGATG 275576 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | |||||| Sbjct 275577 GTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611 >seq334 Length=270071 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || | ||| || | || || Sbjct 22345 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 22286 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || |||| || ||||||||| Sbjct 22285 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22226 Query 211023 TGGATCTT 211030 |||||||| Sbjct 22225 TGGATCTT 22218 >seq332 Length=679357 Score = 100 bits (110), Expect = 7e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| ||| ||||| ||||| |||||||| | || Sbjct 209469 GTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGT 209528 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||||| |||||| | |||||| | ||| |||| ||| || |||||||||| | Sbjct 209529 CTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACC 209588 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || ||||||||||| | ||| || | |||| || || ||||| ||| | Sbjct 209589 ACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGTCGCCGTAGACGTCAGC 209648 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 ||| || || ||| ||||| || | || |||||| |||| || | ||| || | Sbjct 209649 GAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTG 209708 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||||||||| || | |||| | |||||||| Sbjct 209709 CATGAAGAGATCGGGAATCCACAAAGCATAGAA 209741 >seq306 Length=305464 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || | || || | ||||| Sbjct 48708 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 48649 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || |||| || |||||||| Sbjct 48648 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 48590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146193010715