Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17]
391 sequences; 33,420,179 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq308 168 2e-36
seq334 105 2e-17
seq332 100 7e-16
seq306 93.3 1e-13
>seq308
Length=314950
Score = 168 bits (186), Expect = 2e-36
Identities = 150/188 (80%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || |||||||| || || ||||| || || | ||||| | ||||||
Sbjct 275856 AGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCT 275915
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||||||||| || || ||||| || |||| || |||||||||
Sbjct 275916 TCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 275975
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| ||||||||||| || || |||||||||||||| |||
Sbjct 275976 TGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 276035
Query 211083 TTTCCCGT 211090
||||| ||
Sbjct 276036 TTTCCGGT 276043
Score = 163 bits (180), Expect = 7e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||||||||| ||||| ||||| || |||||||| || || | || ||
Sbjct 276128 ACGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 276187
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || ||||||||||| || ||||| | ||| || ||||| ||||||| ||
Sbjct 276188 GCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCC 276247
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || ||||| |||||||| || || || ||||| ||
Sbjct 276248 TTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAG 276307
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||||||||| || ||||
Sbjct 276308 GGTGATCGTCTTACCGGTGA 276327
Score = 141 bits (156), Expect = 2e-28
Identities = 161/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||||||||| || || ||||| || |||| || || | || ||
Sbjct 275400 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 275459
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| |||||||| || ||||| || |||||||| || | || |||||||||
Sbjct 275460 TCAAGCTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 275519
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || || || ||||| ||||| ||| |||||||| | |||||
Sbjct 275520 TGGATCTTGGACTTGACATTGTCGATTGTGTCGCTAGA---CTCAACCTCCAATGTGATG 275576
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || ||||| ||||| || || | ||||||
Sbjct 275577 GTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 275611
>seq334
Length=270071
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || || ||||| || |||||||| || || | ||| || | || ||
Sbjct 22345 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 22286
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| || |||| || |||||||||
Sbjct 22285 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22226
Query 211023 TGGATCTT 211030
||||||||
Sbjct 22225 TGGATCTT 22218
>seq332
Length=679357
Score = 100 bits (110), Expect = 7e-16
Identities = 186/273 (68%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||| ||||||||||| ||| ||||| ||||| |||||||| | ||
Sbjct 209469 GTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGT 209528
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||||| |||||| | |||||| | ||| |||| ||| || |||||||||| |
Sbjct 209529 CTCAGTCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACC 209588
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
|| || ||||||||||| | ||| || | |||| || || ||||| ||| |
Sbjct 209589 ACGACCCTCCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCGTCGCCGTAGACGTCAGC 209648
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332
||| || || ||| ||||| || | || |||||| |||| || | ||| || |
Sbjct 209649 GAGGCCAGGGCACTCGTTGGGACACATAAGGGTCCACTCGCCGTTCTCTTGCACACGCTG 209708
Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
||||||||| || | |||| | ||||||||
Sbjct 209709 CATGAAGAGATCGGGAATCCACAAAGCATAGAA 209741
>seq306
Length=305464
Score = 93.3 bits (102), Expect = 1e-13
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||| ||||| || |||||||| || || | || || | |||||
Sbjct 48708 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 48649
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| |||||||| || || || ||||| || |||| || ||||||||
Sbjct 48648 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 48590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159146193010715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |