Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq308 145 2e-29 seq107 102 2e-16 seq334 96.9 8e-15 seq306 95.1 3e-14 >seq308 Length=314950 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||| || || ||||| || || || | ||||| |||| | || Sbjct 275846 ACGCAGACGCAGGACAAGATGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 275905 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 275906 GCGGCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACC 275965 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||||||||| || | || || || | Sbjct 275966 CTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCGAG 276025 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 276026 AGTGATGGTCTTTCCGGTCA 276045 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||||||||| || || || |||| ||||| |||| || ||| Sbjct 276128 ACGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 276187 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| | || || ||||| || ||||| || Sbjct 276188 GCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATGCC 276247 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || |||||||| || || | ||||| || | Sbjct 276248 TTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGAAGACTCCACCTCAAG 276307 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 276308 GGTGATCGTCTTACCGGT 276325 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || |||| ||||| |||| | || | || || Sbjct 275628 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCGTCC 275687 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || ||||| || Sbjct 275688 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 275747 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| || | || || || | ||||| ||| Sbjct 275748 TGAATCTTCGACTTCACGTTATCGATTGTGTCCGACGACTCAACCTCAAGTGTGATAGTC 275807 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 275808 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 275839 >seq107 Length=32175 Score = 102 bits (112), Expect = 2e-16 Identities = 188/271 (69%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 ||||| ||||||| || ||| ||||| | ||||| ||| |||||| | | || Sbjct 5615 TTATACTTAATATATGCCTTATTTGCTGGTTTAATAGGAACTGCCTTTTCTGTTTTAATT 5556 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 || |||||| | | | || || ||| ||| | || | ||| |||| | || ||| Sbjct 5555 AGATTAGAACTGTCAGGACCTGGAGTTCAG-TAT--ATTGCTGATAACCAATTATATAAC 5499 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 ||||||||| || || || | |||||||||||||| | |||||||| | | | || Sbjct 5498 AGTATTATTACTGCTCACGCTATAATTATGATTTTCTTTATGGTTATGCCTGCTTTAATT 5439 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATT-GGTGCTCCTGATATGGCTTTTCC 7682 || || || || || | || |||| || | |||| || | |||||||||| || || Sbjct 5438 GGAGGATTTGGTAACTTCTTACTTCCATT-AGGATTAGGAGGACCTGATATGGGATTCCC 5380 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTA 7713 ||| ||||| ||||| |||| | |||| || Sbjct 5379 AAGACTTAATAATATTAGTTACTTATTATTA 5349 >seq334 Length=270071 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| |||| | ||| | || || Sbjct 22345 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 22286 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || ||||| || ||||| || |||||||| Sbjct 22285 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22226 Query 225622 TGGATCTT 225629 |||||||| Sbjct 22225 TGGATCTT 22218 >seq306 Length=305464 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || || || |||| ||||| |||| | ||| | ||||| Sbjct 48708 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 48649 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || ||||| || ||||||||| Sbjct 48648 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 48589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525225791354