Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq308 143 6e-29 seq306 87.8 4e-12 seq334 86.0 2e-11 >seq308 Length=314950 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || ||||||||||| |||||||| || || |||||||| |||||||| Sbjct 276327 TCACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCGGATACCATCGACAACGTCAAGA 276268 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| ||||| || ||||| |||||||| || | ||||| ||||| | Sbjct 276267 GCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGCTTGATCTTTGCCGGCA 276208 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| ||||| | ||||| |||| || ||| |||| || || || || || | Sbjct 276207 AGCAGCTCGAGGATGGTCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCC 276148 Query 178123 ATCTTGT 178129 | ||||| Sbjct 276147 ACCTTGT 276141 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| |||||||| || || ||||||||||| ||||| || Sbjct 276043 ACCGGAAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGTCG 275984 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || || |||||||| || ||||||||||| || || Sbjct 275983 AAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTCGCTGGTAAG 275924 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | || || |||| || ||| | || || || || ||||||||| Sbjct 275923 CAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACACTGCAT 275864 Query 178125 CTTGT 178129 ||||| Sbjct 275863 CTTGT 275859 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| || ||||| || || ||| Sbjct 275836 CAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACACTTGAGGTTGAGTCGTCGGAC 275777 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || ||||||||||||||||| Sbjct 275776 ACAATCGATAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAG 275717 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || ||| |||| || ||| || Sbjct 275716 CGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACACTTTCCGACTACAACATC 275657 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 275656 CAGAAGGAGTCCACCCTTCA-CTTGGTT 275630 >seq306 Length=305464 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || ||||||||||| || |||||||| Sbjct 48590 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 48649 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | ||||| |||| || ||| |||| || || || || || || || || Sbjct 48650 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGT 48705 >seq334 Length=270071 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || ||||||||||| || | |||||||| || || Sbjct 22218 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 22277 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | |||||| |||| || ||| |||| || || || || || || Sbjct 22278 CAGCTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA- 22336 Query 178125 CTTG 178128 |||| Sbjct 22337 CTTG 22340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725169682854