Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1477 132 7e-26 seq1135 113 7e-20 seq849 105 1e-17 >seq1477 Length=21063 Score = 132 bits (146), Expect = 7e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || |||||||||||||| | || | ||| || |||||| || ||| ||||| Sbjct 15737 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 15796 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| || |||||||| || ||||| || ||||| || | ||||| || ||||| Sbjct 15797 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 15856 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | |||||| | || || ||||| ||||||||||| ||| | || Sbjct 15857 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCAC 15916 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||| ||||| || Sbjct 15917 TTAGTCCTACGTTTACGCGGTGGAAT 15942 Score = 129 bits (142), Expect = 9e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || || ||||| || ||| ||||| | || | ||| || || ||| ||||| Sbjct 16015 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 16074 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| |||||||| || ||||| ||||||||||| || |||||||| |||||| Sbjct 16075 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 16134 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | ||||| |||||||| | || ||||| || ||||||||||| || | || Sbjct 16135 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 16194 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || ||||| || Sbjct 16195 TTGGTCCTTCGTCTTCGTGGTGGCAT 16220 Score = 123 bits (136), Expect = 4e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || || ||||| || || | ||| | || || || || ||| |||| | ||| Sbjct 16291 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16350 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || || || ||||| || ||||| ||||||||||| | || ||||| || ||| Sbjct 16351 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 16410 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | |||||| ||||||||||| ||||| || |||||||||||||| || | ||| Sbjct 16411 CAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCAT 16470 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| | ||| | || |||||||| Sbjct 16471 CTAGTTCTCCGTCTTCGTGGTGGTAT 16496 Score = 114 bits (126), Expect = 2e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || || |||||||| ||| | || | || | ||| || ||| ||| | ||| Sbjct 16576 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 16635 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||||||||| || || || || ||||| | | || |||||||||||| Sbjct 16636 AAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAAA 16695 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | |||||| | ||||| ||| ||| || || || || |||||||| ||| | ||| Sbjct 16696 CAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCAT 16755 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 || || | ||| || |||| || || Sbjct 16756 TTAGTGCTTCGTCTAAGAGGAGGCAT 16781 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || ||| | || || ||||| |||||| | || | ||| | Sbjct 16780 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 16839 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | ||| || || ||||||||||||||||| ||||| || ||| Sbjct 16840 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 16899 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| ||||| ||| | || ||| | || || | | ||||| || Sbjct 16900 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAACGATTACAAC 16959 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| ||| | || || || | ||| | || |||||| Sbjct 16960 ATACAAAAGGAATCGACTCTCCACTTAGTGCTTCGTCTTCGCGGTGGT 17007 >seq1135 Length=44572 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || |||||||| || | ||| | || || Sbjct 30677 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 30736 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||||| |||||||| ||||| || |||||||| ||| Sbjct 30737 GACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAA 30796 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||||||| | ||||| | || ||||| || || || Sbjct 30797 CAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAAC 30856 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| ||| | ||| | || | ||| | || || || Sbjct 30857 ATCCAAAAAGAATCTACTCTTCATCTCGTACTTCGTCTTCGTGGAGG 30903 >seq849 Length=64135 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| ||||| ||||||||||| || ||||| |||| | ||| |||||| |||| Sbjct 59887 AAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAATTGATAAT 59828 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | ||| || || || |||||||| || || || |||||||||||| | | || ||| Sbjct 59827 GTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTTGATATTT 59768 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAA 124726 || || ||||| | || ||| | ||||| | ||||| ||||||||||| Sbjct 59767 GCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAA 59715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755399954608000