Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq643 250 2e-61 seq1878 131 1e-25 seq1135 98.7 9e-16 seq1477 82.4 7e-11 >seq643 Length=60608 Score = 250 bits (276), Expect = 2e-61 Identities = 638/959 (67%), Gaps = 18/959 (2%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || | ||| || || ||||| || || || | ||| || |||||||||||||| Sbjct 38727 GATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTCAACAATTTCGGTACAA 38668 Query 23087 AGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 ||||| ||||| || || || | ||| | || ||||| ||| ||| || | | Sbjct 38667 AGATTAGAGCTACGG---ATAGTCCCGAGATTTTTTTGATTGCTCTTTTTATTACATGCA 38611 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 || ||||||||||| | || || || || || || | ||||| || | ||| Sbjct 38610 TCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTCGATTATTGAGTACCAT 38551 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCC-TTCTTCCTCGTACTTTTGGTACAA 23262 | | || || || | || ||| | | || ||||| || ||||||| || || Sbjct 38550 AGCTTTTGTGCCATAATAGTTCT-ACGGCCTTTCCCTTCTTGTTCATACTTTTCATATAA 38492 Query 23263 CGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 || |||||||| | || || ||| || || || || || ||| || ||||| | Sbjct 38491 AGCCTCAAATTCATCGCCATACACA-TCAGCTAGACCAGGACATTCACAAGGGCACATCA 38433 Query 23322 GACTCCACATTGAG--TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 | |||| || | | |||||||| | ||||||| ||||| |||||||| || || Sbjct 38432 GGGTCCA--TTCACCATTTTTTTCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGGGC 38375 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCCAAA 23437 ||||| || || || || || || || ||||||||| || | |||| | | || | Sbjct 38374 ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCG-TGAT-TTTTGCGGAGGTCGAGG 38317 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 || || || | || || ||||| ||||| | || | || || || ||||| | |||| Sbjct 38316 AACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAATGCTCCCGGACGCTTA 38257 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 || || || ||||| || || | ||| || || ||| | |||| |||||||| || | | Sbjct 38256 TTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAATA 38197 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 || || || || | || || | | | |||| | || |||| |||| Sbjct 38196 CCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGCGCGAATCCGATGAATA 38137 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | || || || || ||| | ||| || ||||| ||||| ||||| ||| |||||| Sbjct 38136 TTTAAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGTTTTCAAAGTATCGTAG 38077 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 || || || || || |||||||| | | | || || || ||||| | ||| | || Sbjct 38076 ATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGAAGAGAGTTGAGATTGT 38017 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || ||| |||| | || || || ||| || |||||||||||| ||| ||||||||| Sbjct 38016 GGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTATTTATTGGACATTAGA 37957 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 || || || || || || | |||||||| ||| ||| || || | ||||| ||||| Sbjct 37956 TTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCCAACAGCGACACGCATT 37897 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||| | ||| || | ||| || | | || | | |||||||| | || | Sbjct 37896 ATCATATGTTGTGGCCGCTCCACAATTTTATCATTGAGGCGAAGAAGATATGATCTTTCC 37837 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | || || || |||||||| | || |||||||| ||||| | ||||| || ||||| Sbjct 37836 AGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCATAAACTATCGCGGAATT 37778 >seq1878 Length=35555 Score = 131 bits (144), Expect = 1e-25 Identities = 232/335 (69%), Gaps = 5/335 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||| || || ||||| |||||||| | || || | || || Sbjct 22219 ATATGGCATATGTACAAAAAAGCCGAGGCATCTTTTTGGACTGCTGAGGAGATTGATTTG 22278 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||| ||| | ||||||| || | ||||| || ||| || | ||||| Sbjct 22279 TCTAAAGATATCCACGATTGGAATAACCGTCTCAATGATGATGAACGATACTTTATATCT 22338 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || ||||| ||||| || || || |||||||| || || | ||||| | Sbjct 22339 CATGTGCTAGCCTTTTTTGCCGCCTCAGACGGGATTGTTAATGAAAACCTCGTCGAGCGG 22398 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| |||||||| | | ||||| |||| |||||| ||||||||| | || Sbjct 22399 TTTAGCAGTGAAGTGCAGATTCCTGAGGCTAGATTCTTTTATGGATTTCAAATTATGATG 22458 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 ||||| | || || |||| |||||||| | |||||||| ||| | || || ||| Sbjct 22459 GAAAATATCCACTCTGAAACTTATTCGCTTTTAATCGATACTTACATAAAAGATCAAGCT 22518 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 | | |||| || || ||||| || ||||| |||| Sbjct 22519 CAAAAAACTTA-TCTTTTCAATGCTATCGAGACAA 22552 >seq1135 Length=44572 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||||||||| || || || || || ||||| || || | || || || | Sbjct 30673 AATCATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTC 30732 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || ||| | ||| || ||||||||| | || || || Sbjct 30733 ATCGGACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGA 30792 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| || ||| | || || || || ||||| | || ||| ||| || || || Sbjct 30793 CCAACAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTA 30852 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||||||||| ||||||||||| |||||| Sbjct 30853 CAACATCCAAAAAGAATCTACTCTTCATCTCGTACTT 30889 >seq1477 Length=21063 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || ||||| || ||| | || || || | ||||||| | || | || ||| Sbjct 16291 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16350 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | |||| |||||||||||| | || ||||| || || | |||| || ||||||||| Sbjct 16351 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 16410 Query 31337 CAGTTGGAAGACTCTATGACTATGAGC-GATTATAACATTCAAAAAGAATCGACTCTTCA 31395 || | || || | || || | | ||||| ||||||||||||||||| || ||||| Sbjct 16411 CAACTTGAGGA-TGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCA 16469 Query 31396 TCTGGTACT 31404 ||| || || Sbjct 16470 TCTAGTTCT 16478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733329705200