Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1878 161 1e-34 >seq1878 Length=35555 Score = 161 bits (178), Expect = 1e-34 Identities = 580/901 (64%), Gaps = 61/901 (7%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| |||| |||| |||||| || |||||||| || || ||| || |||||| Sbjct 23114 TTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGCCAAAGAGATATTT 23055 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| ||||||||||||||| ||||| | | ||||| | |||| | || Sbjct 23054 TCCATGAAATCAAATGGATTT-TTGACTTTGTATACTTTGGAATTTCCTAACGAGAGGAG 22996 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 | || ||| |||| || || || || || ||| | | ||||| || | ||| Sbjct 22995 AAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCGTTCATGCCGAGTAG 22936 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || | | |||| |||||||| |||||| || || | | | |||| Sbjct 22935 AGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACGGCTTGTGTGATAAC 22876 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | || | || ||||| || | || | |||| ||| | | ||| ||||| Sbjct 22875 ATCCTGAACAGACTGCTTAGATGGTCTGTGCTTCAAATGTGAAAAGAGGAGACAAGCAAA 22816 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 || || ||||| || || | |||||||||||| ||||| |||| || | ||| Sbjct 22815 GTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAAAAGGTTAGGCCAGCCAT 22756 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 ||| |||||||| || |||||||| || | |||||| || || || ||||||||||| Sbjct 22755 CAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCACTGAAAAATATTCCCTC 22696 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATT 14058 ||||||||||| |||| | |||| |||||| | | | ||||| | || ||||| Sbjct 22695 CACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCTTTGTCTTGA-ATCCAAC 22637 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAA--TCCATTGTTTCAATAGC-ATTA---- 14111 ||||| ||||| ||||| |||||| || | | || || || | |||| Sbjct 22636 GGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAATCGTTAACGATTATCGC 22577 Query 14112 AAT--------AAAT----ATTCCTTCTC------------------------TTTAGTA 14135 || |||| ||| ||| || ||| | Sbjct 22576 GATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAAAGATAAGTTTTTTGAG 22517 Query 14136 CTTGA-----AATGTATGTATCAATAAGTAAGC-TATACATTTCAGAGTGTATGTTTTCC 14189 ||||| ||||| ||||| || | |||| ||| |||||||||| || |||||| Sbjct 22516 CTTGATCTTTTATGTAAGTATCGATTA-AAAGCGAATAAGTTTCAGAGTGGATATTTTCC 22458 Query 14190 ATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAAT 14249 || || ||||| ||||||||| ||||||| || | || ||||| | ||| Sbjct 22457 ATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGCACTTCACTGCTAAAC 22398 Query 14250 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA--ATATGT 14307 | ||| | | ||||||||||| || || || || |||||||| || | | ||| Sbjct 22397 CGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAAAAGGCTAGCACATGA 22338 Query 14308 TTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGATAAATCCTTAG 14364 | ||||||||| | || |||| |||| | || ||||||||| | ||| |||| Sbjct 22337 GAT--ATAAAGTATCGTTCATCATCATTGAGACGGTTATTCCAATCGTGGATATCTTTAG 22280 Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14424 | | ||| | || ||| | ||||||||| || | |||||||| ||||| ||||| Sbjct 22279 ACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTTTTGTACATATGCCATA 22220 Query 14425 T 14425 | Sbjct 22219 T 22219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479692410179000