Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1135 113 5e-20 seq1477 107 2e-18 >seq1135 Length=44572 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||||| |||||||||||||| |||||||| || | Sbjct 30903 CCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 30844 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||| ||||||||||| || ||| | |||| |||||| || || || || Sbjct 30843 AATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGA 30784 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || |||||| ||||| | || | ||||||| | || || Sbjct 30783 ATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACC 30724 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||||| ||||| |||||||| Sbjct 30723 TCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 30677 >seq1477 Length=21063 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | ||||| || | || ||||| |||||||||||||||||| Sbjct 17009 TGACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCG 16950 Query 143015 CTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | || | || | ||||| ||||| || |||||| |||||| | ||| || || || Sbjct 16949 TTAAGAGTACGTCCA-TCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGG 16891 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || |||||||| || || || ||| | | || | || || | | ||| Sbjct 16890 TGGAATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTC 16831 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| ||| | || || || ||||||||||| || ||||| ||||| Sbjct 16830 TACTTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 16780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||| ||||| |||||||||||||| |||||||||| | Sbjct 16493 CCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAAT--CAG 16436 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || |||| || || |||||||| |||||| |||| | | ||| |||||||| | Sbjct 16435 ATAATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTG 16376 Query 143076 GTATGCCTTCTTTGTC 143091 | || ||||| ||||| Sbjct 16375 GAATTCCTTCCTTGTC 16360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506976785869200