Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq32 140 2e-28 seq5918 122 6e-23 seq5713 107 1e-18 seq1135 105 4e-18 seq849 96.9 2e-15 seq1477 84.2 1e-11 >seq32 Length=7780 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5116 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5175 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5176 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5210 >seq5918 Length=1321 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 138 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAAGTAGGGACAGATGGAATCTCGT 79 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 78 TAATCCATTCATGCACGTCACTAATTAGATGACGA 44 >seq5713 Length=5555 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| Sbjct 3390 CTCTCTCTTCAAAGTTCTTTTCAACTTTCGTTCACACTACTTGTTTGCTATCGGTCTCGC 3331 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 3330 AGTGATATTTAGCCTTA 3314 >seq1135 Length=44572 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| || ||||| || ||||| |||||||| || |||| || | ||| Sbjct 30880 ATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTCCTCGAGTTG 30821 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 |||||| ||||| || | |||||||| || | || | |||||| || || ||||| Sbjct 30820 TTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGGATTTT 30761 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | || ||||| | || || || || || || | ||||||||||||||||| Sbjct 30760 TGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGTTTTACCCGT 30701 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||||||||| || |||||| || Sbjct 30700 GAGGGTTTTCACGAAAATTTGCATGATT 30673 >seq849 Length=64135 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||||||||||||||||||||| | | ||| | || || | ||||| || ||||||| Sbjct 59713 CCTTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATA 59772 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | ||||||||||| | ||||| || ||||| ||| || ||| |||||||| | Sbjct 59773 TCAAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTAT 59832 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 | || || ||||| ||||| || |||||||| || || | ||| || |||| Sbjct 59833 CAATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGA 59892 Query 38308 A 38308 | Sbjct 59893 A 59893 >seq1477 Length=21063 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| || || ||||| |||||||| || |||||||| Sbjct 17007 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTT 16948 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | |||| | || || | ||| ||||| ||||| || | | |||||| || | || Sbjct 16947 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGG 16888 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || || || || || || | | |||||| | ||| || Sbjct 16887 AATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 16828 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| | || || ||||| || ||||| ||||| || |||||||||||| Sbjct 16827 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCATG 16779 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | ||| | ||| |||||||||||| || || || || ||||| || || Sbjct 16778 CCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 16719 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || | || || | ||||||||| |||||||||| || ||||| || | || Sbjct 16718 AAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGA 16659 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| || |||||| || || || | | || || | || ||| Sbjct 16658 ATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACT 16599 Query 38271 TCTAATGTAATAGTTTTACCCGT 38293 || | |||||||||||||| || Sbjct 16598 TCGAGAGTAATAGTTTTACCGGT 16576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334922972326985